The listings of 2011 and 2012 are incomplete.Publications Research Group Henning Urlaub
2012
Alkhaja, A. K., D. C. Jans, M. Nikolov, M. Vukotic, O. Lytovchenko, F. Ludewig, W. Schliebs, D. Riedel, H. Urlaub, S. Jakobs and M. Deckers:
MINOS1 is a conserved component of mitofilin complexes and required for mitochondrial function and cristae organization.
Molecular Biology of the Cell 23, 247-257 (2012)
Lemeer, S., E. Kunold, S. Klaeger, M. Raabe, M. W. Towers, E. Claudes, T. N. Arrey, K. Strupat, H. Urlaub and B. Kuster:
Phosphorylation site localization in peptides by MALDI MS/MS and the Mascot Delta Score.
Analytical and Bioanalytical Chemistry 402, 249-260 (2012)
Strasser, D., K. Neumann, H. Bergmann, M. J. Marakalala, R. Gula, A. Rojowska, K. P. Hopfner, F. Brombacher, H. Urlaub, G. Baier, G. D. Brown, M. Leitges and J. Ruland:
Syk kinase-coupled C-type lectin receptors engage protein kinase C-delta to elicit Card9 adaptor-mediated innate immunity.
Immunity 36, 32-42 (2012)
2011
Agafonov, D. E., J. Deckert, E. Wolf, P. Odenwälder, S. Bessonov, C. L. Will, H. Urlaub and R. Lührmann:
Semiquantitative proteomic analysis of the human spliceosome via a novel two-dimensional gel electrophoresis method.
Molecular and Cellular Biology 31, 2667-2682 (2011)
Bohnenberger, H., T. Oellerich, M. Engelke, H. H. Hsiao, H. Urlaub and J. Wienands:
Complex phosphorylation dynamics control the composition of the Syk interactome in B cells.
European Journal of Immunology 41, 1550-1562 (2011)
Brakemann, T., A. C. Stiel, G. Weber, M. Andresen, I. Testa, T. Grotjohann, M. Leutenegger, U. Plessmann, H. Urlaub, C. Eggeling, M. C. Wahl, S. W. Hell and S. Jakobs:
A reversibly photoswitchable GFP-like protein with fluorescence excitation decoupled from switching.
Nature biotechnology 29, 942-947 (2011)
Eilebrecht, S., G. Brysbaert, T. Wegert, H. Urlaub, B. J. Bennecke and A. Bennecke:
7SK small nuclear RNA directly affects HMGA1 function in transcription regulation.
Nucleic Acids Research 39, 2057-2072 (2011)
Emami-Nemini, A., H. Urlaub, M. Lohse and C. Klenk: The guanine nucleotide exchange factor vav2 acts as an adaptor for parathyroid hormone receptor signaling. In: Naunyn-Schmiedebergs Archives of Pharmacology, 383, Supplement 1, (2011) 21-22
Kramer, K., P. Hummel, H. H. Hsiao, X. Luo, M. Wahl and H. Urlaub:
Mass-spectrometric analysis of proteins cross-linked to 4-thio-uracil- and 5-bromo-uracil-substituted RNA.
International Journal of Mass Spectrometry 304, 184-194 (2011)
Krumova, P., E. Meulmeester, M. Garrido, M. Tirard, H. H. Hsiao, G. Bossis, H. Urlaub, M. Zweckstetter, S. Kuegler, F. Melchior, M. Baehr and J. H. Weishaupt:
Sumoylation inhibits alpha-synuclein aggregation and toxicity.
Journal of Cell Biology 194, 49-60 (2011)
Levin, J., J. Wagner, S. Ryazanov, A. Leonov, S. Shi, F. Schmidt, C. Prix, U. Bertsch, G. Mitteregger-Kretzschmar, M. Geissen, T. Hischberger, P. Tavan, J. Pilger, M. Zweckstetter, T. Frank, M. Baehr, J. Weishaupt, M. Uhr, H. Urlaub, U. Teichmann, K. Boetzel, M. Groschup, H. A. Kretzschmar, C. Griesinger and A. Giese: Causal therapy of Parkinson's disease with anle138b, a novel protein aggregation inhibitor. In: Movement Disorders, 26, Supplement 2, (2011) S21
Mueller, M., R. G. Heym, A. Mayer, K. Kramer, M. Schmid, P. Cramer, H. Urlaub, R. P. Jansen and D. Niessing:
A cytoplasmic complex mediates specific mRNA recognition and localization in yeast.
PLoS Biology 9, e1000611 (2011)
Neumann, K., T. Oellerich, I. Heine, H. Urlaub and M. Engelke:
Fc gamma receptor IIb modulates the molecular Grb2 interaction network in activated B cells.
Cellular Signalling 23, 893-900 (2011)
Nikolov, M., A. Stützer, K. Mosch, A. Krasauskas, S. Sörös, H. Stark, H. Urlaub and W. Fischle:
Chromatin affinity purification and quantitative mass spectrometry defining the interactome of histone modification patterns.
Molecular and Cellular Proteomics 10, DOI: 10.1074/mcp.M110.005371 (2011)
Oellerich, T., V. Bremes, K. Neumann, H. Bohnenberger, K. Dittmann, H. H. Hsiao, M. Engelke, T. Schnyder, F. D. Batista, H. Urlaub and J. Wienands:
The B-cell antigen receptor signals through a preformed transducer module of SLP65 and CIN85.
EMBO Journal 30, 3620-3634 (2011)
Ons, S., M. Sterkel, L. Diambra, H. Urlaub and R. Rivera-Pomar:
Neuropeptide precursor gene discovery in the Chagas disease vector Rhodnius prolixus.
Insect Molecular Biology 20, 29-44 (2011)
Pidoux, G., O. Witczak, E. Jarnaess, L. Myrvold, H. Urlaub, A. J. Stokka, T. Kuntziger and K. Tasken:
Optic atrophy 1 is an A-kinase anchoring protein on lipid droplets that mediates adrenergic control of lipolysis.
EMBO Journal 30, 4371-4386 (2011)
Ruedel, S., Y. Wang, R. Lenobel, R. Koerner, H. Hsiao, H. Urlaub, D. Patel and G. Meister:
Phosphorylation of human Argonaute proteins affects small RNA binding.
Nucleic Acids Research 39, 2330-2343 (2011)
Schnyder, T., A. Castello, C. Feest, N. E. Harwood, T. Oellerich, H. Urlaub, M. Engelke, J. Wienands, A. Bruckbauer and F. D. Batista:
B cell receptor-mediated antigen gathering requires ubiquitin ligase Cbl and adaptors Grb2 and Dok-3 to recruit dynein to the signaling microcluster.
Immunity 34, 905-918 (2011)
Sela, M., Y. Bogin, D. Beach, T. Oellerich, J. Lehne, J. E. Smith-Garvin, M. Okumura, E. Starosvetsky, R. Kosoff, E. Libman, G. Koretzky, T. Kambayashi, H. Urlaub, J. Wienands, J. Chernoff and D. Yablonski:
Sequential phosphorylation of SLP-76 at tyrosine 173 is required for activation of T and mast cells.
EMBO Journal 30, 3160-3172 (2011)
Sterkel, M., H. Urlaub, R. Rivera-Pomar and S. Ons:
Functional proteomics of neuropeptidome dynamics during the feeding process of Rhodnius prolixus.
Journal of Proteome Research 10, 3363-3371 (2011)
Totaro, A., F. Renzi, G. La Fata, C. Mattiolo, M. Raabe, H. Urlaub and T. Achsel:
The human Pat1b protein: A novel mRNA deadenylation factor identified by a new immunoprecipitation technique.
Nucleic Acids Research 39, 635-647 (2011)
Vazquez-Pianzola, P., H. Urlaub and B. Suter:
Pabp binds to the osk 3'UTR and specifically contributes to osk mRNA stability and oocyte accumulation.
Developmental Biology 357, 404-418 (2011)
Wehner, P., I. Snitsar, H. Urlaub and A. Borchers:
RACK1 is a novel interaction partner of PTK7 that is required for neural tube closure.
Development 138, 1321-1327 (2011)
Zhang, Z., O. Kelemen, M. A. van Santen, S. M. Yelton, A. E. Wendlandt, V. M. Sviripa, M. Bollen, M. Beullens, H. Urlaub, R. Lührmann, D. S. Watt and S. Stamm:
Synthesis and characterization of pseudocantharidins, novel phosphatase modulators that promote the inclusion of exon 7 into the SMN (survival of motoneuron) pre-mRNA.
Journal of Biological Chemistry 286, 10126-10136 (2011)
2010
Beller, M., A. V. Bulankina, H. Hsiao, H. Urlaub, H. Jaeckle and R. P. Kuehnlein:
PERILIPIN-dependent control of lipid droplet structure and fat storage in Drosophila.
Cell Metabolism 12, 521-532 (2010)
Bessonov, S., M. Anokhina, A. Krasauskas, M. M. Golas, B. Sander, C. L. Will, H. Urlaub, H. Stark and R. Luehrmann:
Characterization of purified human Bact spliceosomal complexes reveals compositional and morphological changes during spliceosome activation and first step catalysis.
RNA 16, 2384-2403 (2010)
Fischer, S., J. Benz, B. Spaeth, L. K. Maier, J. Straub, M. Grenzow, M. Raabe, H. Urlaub, J. Hoffmann, B. Brutschy, T. Allers, J. Soppa and A. Marchfelder:
The archaeal Lsm protein binds to small RNAs.
Journal of Biological Chemistry 285, 34429-34438 (2010)
Geoui, T., H. Urlaub, U. Plessmann and P. Porschewski:
Extraction of proteins from formalin-fixed, paraffin-embedded tissue using the Qproteome extraction technique and preparation of tryptic peptides for liquid chromatography/mass spectrometry analysis.
Current Protocols in Molecular Biology 90, DOI: 10.1002/0471142727.mb1027s90 (2010)
Ghalei, H., H. H. Hsiao, H. Urlaub, M. C. Wahl and N. J. Watkins:
A novel Nop5–sRNA interaction that is required for efficient archaeal box C/D sRNP formation.
RNA 16, 2341-2348 (2010)
Groenborg, M., N. J. Pavlos, I. Brunk, J. Chua, A. Muenster-Wandowski, D. Riedel, G. Ahnert-Hilger, H. Urlaub and R. Jahn:
Quantitative comparison of glutamatergic and GABAergic synaptic vesicles unveils selectivity for few proteins including MAL2, a novel synaptic vesicle protein.
Journal of Neuroscience 30, 2-12 (2010)
Grote, M., E. Wolf, C. L. Will, I. Lemm, D. E. Agafonov, A. Schomburg, W. Fischle, H. Urlaub and R. Luehrmann:
Molecular architecture of the human Prp19/CDC5L complex.
Molecular and Cellular Biology 30, 2105-2119 (2010)
Hsiao, H. H. and H. Urlaub:
Pseudo-neutral-loss scan for selective detection of phosphopeptides and N-glycopeptides using liquid chromatography coupled with a hybrid linear ion-trap/orbitrap mass spectrometer.
Proteomics 10, 3916-3921 (2010)
Hsiao, H. H.:
Mass spectrometric analyses of post-translationally modefied proteins.
Jae, N., P. Wang, T. Gu, M. Huehn, Z. Palfi, H. Urlaub and A. Bindereif:
Essential role of a trypanosome U4-specific Sm core protein in small nuclear ribonucleoprotein assembly and splicing.
Eukaryotic Cell 9, 379-386 (2010)
Kuehn-Hoelsken, E., C. Lenz, A. Dickmanns, H. H. Hsiao, F. M. Richter, B. Kastner, R. Ficner and H. Urlaub:
Mapping the binding site of snurportin 1 on native U1 snRNP by cross-linking and mass spectrometry.
Nucleic Acids Research 38, 5581-5593 (2010)
Naarmann, I. S., C. Harnisch, G. Mueller-Newen, H. Urlaub, A. Ostareck-Lederer and D. H. Ostareck:
DDX6 recruits translational silenced human reticulocyte 15-lipoxygenase mRNA to RNP granules.
RNA 16, 2189-2204 (2010)
Owald, D., W. Fouquet, M. Schmidt, C. Wichmann, S. Mertel, H. Depner, F. Christiansen, C. Zube, C. Quentin, J. Koerner, H. Urlaub, K. Mechtler and S. J. Sigrist:
A Syd-1 homologue regulates pre- and postsynaptic maturation in Drosophila.
The Journal of Cell Biology 188, 565-579 (2010)
Pavlos, N. J., M. Groenborg, D. Riedel, J. J. E. Chua, J. Boyken, T. H. Kloepper, H. Urlaub, S. O. Rizzoli and R. Jahn:
Quantitative analysis of synaptic vesicle Rabs uncovers distinct yet overlapping roles for Rab3a and Rab27b in Ca2+-triggered exocytosis.
Journal of Neuroscience 30, 13441-13453 (2010)
Richter, F. M., B. Sander, M. M. Golas, H. Stark and H. Urlaub:
Merging molecular electron microscopy and mass spectrometry by carbon film-assisted endoproteinase digestion.
Molecular and Cellular Proteomics 9, 1729-1741 (2010)
Schmidt, C., C. Lenz, M. Grote, R. Luehrmann and H. Urlaub:
Determination of protein stoichiometry within protein complexes using absolute quantification and multiple reaction monitoring.
Analytical Chemistry 82, 2784-2796 (2010)
Schneider, M., C. L. Will, M. Anokhina, J. Tazi, H. Urlaub and R. Luehrmann:
Exon definition complexes contain the tri-snRNP and can be directly converted into B-like precatalytic splicing complexes.
Molecular Cell 38, 223-235 (2010)
Schneider, M., H. H. Hsiao, C. L. Will, R. Giet, H. Urlaub and R. Luehrmann:
Human PRP4 kinase is required for stable tri-snRNP association during spliceosomal B complex formation.
Nature Structural and Molecular Biology 17, 216-221 (2010)
Schulz, E. C., A. Dickmanns, H. Urlaub, A. Schmitt, M. Muehlenhoff, K. Stummeyer, D. Schwarzer, R. Gerardy-Schahn and R. Ficner:
Crystal structure of an intramolecular chaperone mediating triple–β-helix folding.
Nature Structural and Molecular Biology 17, 210-215 (2010)
2009
Fabrizio, P., J. Dannenberg, P. Dube, B. Kastner, H. Stark, H. Urlaub and R. Luehrmann:
The evolutionarily conserved core design of the catalytic activation step of the yeast spliceosome.
Molecular Cell 36, 593-608 (2009)
Franz, H., K. Mosch, S. Soeroes, H. Urlaub and W. Fischle:
Multimerization and H3K9me3 binding is required for CDYL1b heterochromatin association.
The Journal of Biological Chemistry 284, 35049-35059 (2009)
Galli, S., O. Jahn, R. Hitt, D. Hesse, L. Opitz, U. Plessmann, H. Urlaub, J. J. Poderoso, E. A. Jares-Erijman and T. M. Jovin:
A new paradigm for MAPK: structural interactions of hERK1 with mitochondria in HeLa cells.
PLoS ONE 4, e7541 (2009)
Geiss-Friedlander, R., N. Parmentier, U. Moeller, H. Urlaub, B. J. Van den Eynde and F. Melchior:
The cytoplasmic peptidase DPP9 is rate-limiting for degradation of proline-containing peptides.
Journal of Biological Chemistry 284, 27211-27219 (2009)
Herold, N., C. L. Will, E. Wolf, B. Kastner, H. Urlaub and R. Luehrmann:
Conservation of the protein composition and electron microscopy structure of Drosophila melanogaster and human spliceosomal complexes.
Molecular and Cellular Biology 29, 281-301 (2009)
Hsiao, H. H., E. Meulmeester, B. T. C. Frank, F. Melchior and H. Urlaub:
"ChopNspice", a mass-spectrometric approach that allows identification of endogenous SUMO-conjugated peptides.
Mollecular and Cellular Proteomics 8, 2664-2675 (2009)
Koelling, S., X. Miro, H. Urlaub and N. Miosge: Migratory chondrogenic progenitor cells from late stages of osteoarthritis exhibit gender differences. In: Human Gene Therapy, 20, 11, (2009) 1403
Kuhn, A. N., M. A. Van Santen, A. Schwienhorst, H. Urlaub and R. Luehrmann:
Stalling of spliceosome assembly at distinct stages by small-molecule inhibitors of protein acetylation and deacetylation.
RNA 15, 153-175 (2009)
Lakomek, K., A. Dickmanns, M. Kettwig, H. Urlaub, R. Ficner and T. Luebke:
Initial insight into the function of the lysosomal 66.3 kDa protein from mouse by means of X-ray crystallography.
BMC Structural Biology 9, 56 (2009)
Matyash, A. N., S. Singh, S. D. Hanes, H. Urlaub and H. Jaeckle:
SAP18 promotes Krüppel-dependent transcriptional repression by enhancer-specific histone deacetylation.
Journal of Biological Chemistry 284, 3012-3020 (2009)
Neumann, K., T. Oellerich, H. Urlaub and J. Wienands:
The B-lymphoid Grb2 interaction code.
Immunology Reviews 232, 135-149 (2009)
Oellerich, T., M. Groenborg, K. Neumann, H. H. Hsiao, H. Urlaub and J. Wienands:
SLP-65 phosphorylation dynamics reveals a functional basis for signal integration by receptor-proximal adaptor proteins.
Molecular and Cellular Proteomics 8, 1738-1750 (2009)
Ons, S., F. Richter, H. Urlaub and R. R. Pomar:
The neuropeptidome of Rhodnius prolixus brain.
Proteomics 9, 788-792 (2009)
Pal, A., R. Kraetzner, T. Gruene, M. Grapp, K. Schreiber, M. Groenborg, H. Urlaub, S. Becker, A. R. Asif, J. Gaertner, G. M. Sheldrick and R. Steinfeld:
Structure of tripeptidyl-peptidase I provides insight into the molecular basis of late infantile neuronal ceroid lipofuscinosis.
Journal of Biological Chemistry 284, 3976-3984 (2009)
Palfi, Z., N. Jae, C. Preusser, K. H. Kaminska, J. M. Bujnicki, J. H. Lee, A. Guenzl, C. Kambach, H. Urlaub and A. Bindereif:
SMN-assisted assembly of snRNP-specific Sm cores in trypanosomes.
Genes and Development 23, 1650-1664 (2009)
Rapp, E., A. Charvat, A. Beinsen, U. Plessmann, U. Reichl, A. Seidel-Morgenstern, H. Urlaub and B. Abel:
Atmospheric pressure free liquid infrared MALDI mass spectrometry: toward a combined ESI/MALDI-liquid chromatography interface.
Analytical Chemistry 81, 443-452 (2009)
Richter, F., H. H. Hsiao, U. Plessmann and H. Urlaub:
Enrichment of protein-RNA crosslinks from crude UV-irradiated mixtures for MS analysis by on-line chromatography using titanium dioxide columns.
Biopolymers 91, 297-309 (2009)
Said, N., R. Rieder, R. Hurwitz, J. Deckert, H. Urlaub and J. Vogel:
In vivo expression and purification of aptamer-tagged small RNA regulators.
Nucleic Acids Research 37, e133 (2009)
Schmidt, C. and H. Urlaub:
iTRAQ-labeling of in-gel digested proteins for relative quantification.
In: Proteomics: methods and protocols, (Eds.) Reinders, J.; Sickmann, A., Methods in Molecular Biology 564. Humana Pr., New York (2009) 207-226
Urlaub, H., M. Groenborg and R. Jahn:
Synaptische Vesikel als Modell.
Biospektrum 15, 16-19 (2009)
Warkocki, Z., P. Odenwaelder, J. Schmitzova, F. Platzmann, H. Stark, H. Urlaub, R. Ficner, P. Fabrizio and R. Luehrmann:
Reconstitution of both steps of S. cerevisiae splicing with purified spliceosomal components.
Nature Structural and Molecular Biology 16, 1237-1243 (2009)
Weinmann, L., J. Hoeck, T. Ivacevic, T. Ohrt, J. Muetze, P. Schwille, E. Kremmer, V. Benes, H. Urlaub and G. Meister:
Importin 8 is a gene silencing factor that targets argonaute proteins to distinct mRNAs.
Cell 136, 496-507 (2009)
2008
Bessonov, S., M. Anokhina, C. L. Will, H. Urlaub and R. Luehrmann:
Isolation of an active step I spliceosome and composition of its RNP core.
Nature 452, 846-850 (2008)
Groenborg, M., M. Holt, F. Richter, S. Takamori, D. Riedel, R. Jahn and H. Urlaub:
Proteome analysis of synaptic vesicles.
In: Proteomic of the nervous system, (Eds.) Nothwang, H. G.; Pfeiffer, S. E., (2008) 141-165
Kastner, B., N. Fischer, M. M. Golas, B. Sander, P. Dube, D. Boehringer, K. Hartmuth, J. Deckert, F. Hauer, E. Wolf, H. Uchtenhagen, H. Urlaub, F. Herzog, J. M. Peters, D. Porschke, R. Luehrmann and H. Stark:
GraFix: sample preparation for single-particle electron cryomicroscopy.
Nature Methods 5, 53-55 (2008)
Kastner, B., N. Fischer, M. M. Golas, B. Sander, P. Dube, D. Boehringer, K. Hartmuth, J. Deckert, F. Hauer, E. Wolf, H. Uchtenhagen, H. Urlaub, F. Herzog, J. M. Peters, D. Porschke, R. Luehrmann and H. Stark:
GraFix: sample preparation for single-particle electron cryomicroscopy.
Nature Methods 5, 53-55 (2008)
Luo, X., H. H. Hsiao, M. Bubunenko, D. Weber, D. L. Court, M. E. Gottesmann, H. Urlaub and M. C. Wahl:
Structural and functional analysis of the E. coli NusB-S10 transcription antitermination complex.
Molecular Cell 32, 791-802 (2008)
Marcus, K., E. Kuehn-Hoelsken, C. Schmidt, T. Schulenborg and H. Urlaub:
'Proteomic basics-sample preparation and separation': the 1st european summer school in Kloster Neustift 12-18 August, 2007 Brixen/Bressanone, South Tyrol, Italy.
PROTEOMICS 8, 230-233 (2008)
Martin, N., K. Schwamborn, H. Urlaub, B. Gan, J. L. Guan and A. Dejean:
Spatial interplay between PIASy and FIP200 in the regulation of signal transduction and transcriptional activity.
Molecular and Cellular Biology 28, 2771-2781 (2008)
Mathew, R., K. Hartmuth, S. Moehlmann, H. Urlaub, R. Ficner and R. Luehrmann:
Phosphorylation of human PRP28 by SRPK2 is required for integration of the U4/U6-U5 tri-snRNP into the spliceosome.
Meulmeester, E., M. Kunze, H. H. Hsiao, H. Urlaub and F. Melchior:
Mechanism and consequences for paralog-specific sumoylation of ubiquitin-specific protease 25.
Molecular Cell 30, 610-619 (2008)
Mukherjee, K., M. Sharma, H. Urlaub, G. P. Bourenkov, R. Jahn, T. C. Suedhof and M. C. Wahl:
CASK functions as a Mg2+-independent neurexin kinase.
Cell 133, 328-339 (2008)
Urlaub, H., E. Kuehn-Hoelsken and R. Luehrmann:
Analyzing RNA-protein crosslinking sites in unlabeled ribonucleoprotein complexes by mass spectrometry.
In: RNA-protein interaction protocols, (Ed.) Lin, R. J., Methods in Molecular Biology 488. Humana Press, Totowa, New York (2008) 221-245
Urlaub, H., M. Groenborg, F. Richter, T. D. Veenstra, T. Mueller, F. Tribl, H. E. Meyer and K. Marcus:
Common methods in proteomics.
In: Proteomics of the nervous system, (Eds.) Nothwang, H. G.; Pfeiffer, S. E., Wiley-VCH, (2008) 19-34
2007
Behzadnia, N., M. M. Golas, K. Hartmuth, B. Sander, B. Kastner, J. Deckert, P. Dube, C. L. Will, H. Urlaub, H. Stark and R. Luehrmann:
Composition and three-dimensional EM structure of double affinity-purified, human prespliceosomal A complexes.
The EMBO Journal 26, 1737-1748 (2007)
Hoeck, J., L. Weinmann, C. Ender, S. Rudel, E. Kremmer, M. Raabe, H. Urlaub and G. Meister:
Proteomic and functional analysis of Argonaute-containing mRNA–protein complexes in human cells.
EMBO Reports 8, 1052-1060 (2007)
Kuehn-Hoelsken, E., O. Dybkov, B. Sander, R. Luehrmann and H. Urlaub:
Improved identification of enriched peptide–RNA cross-links from ribonucleoprotein particles (RNPs) by mass spectrometry.
Nucleic Acids Research 35, e95 (2007)
Kumar, P., O. Bischof, P. K. Purbey, D. Notani, H. Urlaub, A. Dejean and S. Galande:
Functional interaction between PML and SATB1 regulates chromatin-loop architecture and transcription of the MHC class I locus.
Nature Cell Biology 9, 45-56 (2007)
Lenz, C., E. Kuehn-Hoelsken and H. Urlaub:
Detection of protein-RNA crosslinks by nanoLC-ESI-MS/MS using precursor ion scanning and multiple reaction monitoring (MRM) experiments.
Journal of the American Society for Mass Spectrometry 18, 869-881 (2007)
Li, X., J. W. Kim, M. Groenborg, H. Urlaub, M. D. Lane and Q. Q. Tang:
Role of cdk2 in the sequential phosphorylation/activation of C/EBPβ during adipocyte differentiation.
Proceedings of the National Academy of Sciences USA 104, 11597-11602 (2007)
Matthes, A., S. Schmidt-Gattung, D. Koehler, J. Forner, S. Wildum, M. Raabe, H. Urlaub and S. Binder:
Two DEAD-box proteins may be part of RNA-dependent high-molecular-mass protein complexes in Arabidopsis mitochondria.
Plant Physiology 145, 1637-1646 (2007)
Merz, C., H. Urlaub, C. L. Will and R. Luehrmann:
Protein composition of human mRNPs spliced in vitro and differential requirements for mRNP protein recruitment.
RNA 13, 116-128 (2007)
Takenaka, M., D. Verbitskiy, J. A. van der Merwe, A. Zehrmann, U. Plessmann, H. Urlaub and A. Brennicke:
In vitro RNA editing in plant mitochondria does not require added energy.
FEBS Letters 581, 2743-2747 (2007)
2006
Deckert, J., K. Hartmuth, D. Boehringer, N. Behzadnia, C. L. Will, B. Kastner, H. Stark, H. Urlaub and R. Luehrmann:
Protein composition and electron microscopy structure of affinity-purified human spliceosomal B complexes isolated under physiological conditions.
Molecular and Cellular Biology 26, 5528-5543 (2006)
Georg, J., L. Schomacher, J. P. J. Chong, A. I. Majernik, M. Raabe, H. Urlaub, S. Muller, E. Ciirdaeva, W. Kramer and H. J. Fritz:
The Methanothermobacter thermautotrophicus ExoIII homologue Mth212 is a DNA uridine endonuclease.
Nucleic Acids Research 34, 5325-5336 (2006)
Holt, M., F. Varoqueaux, K. Wiederhold, S. Takamori, H. Urlaub, D. Fasshauer and R. Jahn:
Identification of SNAP-47, a novel Qbc-SNARE with ubiquitous expression.
Journal of Biological Chemistry 281, 17076-17083 (2006)
Karaduman, R., P. Fabrizio, K. Hartmuth, H. Urlaub and R. Luehrmann:
RNA structure and RNA-protein interactions in purified yeast U6 snRNPs.
Journal of Molecular Biology 356, 1248-1262 (2006)
Takamori, S., M. Holt, K. Stenius, E. Lemke, M. Groenborg, D. Riedel, H. Urlaub, S. Schenck, B. Bruegger, P. Ringler, S. Mueller, B. Rammner, F. Graeter, J. S. Hub, B. L. de Groot, G. Mieskes, Y. Moriyama, J. Klingauf, H. Grubmueller, J. Heuser, F. Wieland and R. Jahn:
Molecular anatomy of a trafficking organelle.
Cell 127, 831-846 (2006)
Trippe, R., E. Guschina, M. Hossbach, H. Urlaub, R. Luehrmann and B. J. Benecke:
Identification, cloning and functional analysis of the human U6 snRNA-specific terminal uridylyl transferase.
RNA 12, 1494-1504 (2006)
2005
Hernandez, G., M. Altmann, J. M. Sierra, H. Urlaub, R. D. del Corral, P. Schwartz and R. Rivera-Pomar: Functional analysis of seven genes encoding eight translation initiation factor 4E (eIF4E) isoforms in Drosophila. In: FEBS Journal, 272, Suppl. 1, (2005) 284
Hernandez, G., M. Altmann, J. M. Sierra, H. Urlaub, R. Diez del Corral, P. Schwartz and R. Rivera-Pomar:
Functional analysis of seven genes encoding eight translation initiation factor 4E (eIF4E) isoforms in Drosophila.
Mechanisms of Development 122, 529-543 (2005)
Kuehn-Hoelsken, E., C. Lenz, B. Sander, R. Luehrmann and H. Urlaub:
Complete MALDI-ToF MS analysis of cross-linked peptide-RNA oligonucleotides derived from nonlabeled UV-irradiated ribonucleoprotein particles.
RNA 11, 1915-1930 (2005)
Meister, G., M. Landthaler, L. Peters, P. Y. Chen, H. Urlaub, R. Luehrmann and T. Tuschl:
Identification of novel argonaute-associated proteins.
Current Biology 15, 2149-2155 (2005)
Rupnik, M., S. Pabst, M. Rupnik, C. von Eichel-Streiber, H. Urlaub and H. D. Soeling:
Characterization of the cleavage site and function of resulting cleavage fragments after limited proteolysis of Clostridium difficile toxin B (TcdB) by host cells.
Microbiology 151, 199-208 (2005)
Vazquez-Pianzola, P., H. Urlaub and R. Rivera-Pomar:
Proteomic analysis of reaper 5 ' untranslated region-interacting factors isolated by tobramycin affinity-selection reveals a role for La antigen in reaper mRNA translation.
PROTEOMICS 5, 1645-1655 (2005)
Zalfa, F., S. Adinolfi, I. Napoli, E. Kuehn-Hoelsken, H. Urlaub, T. Achsel, A. Pastore and C. Bagni:
Fragile X mental retardation protein (FMRP) binds specifically to the brain cytoplasmic RNAs BC1/BC200 via a novel RNA-binding motif.
Journal of Biological Chemistry 280, 33403-33410 (2005)
2004
Bonin, I., R. Robelek, H. Benecke, H. Urlaub, A. Bacher, G. Richter and M. C. Wahl:
Crystal structures of the antitermination factor NusB from Thermotoga maritima and implications for RNA binding.
Biochemical Journal 383, 419-428 (2004)
Makarova, O., E. M. Makarov, H. Urlaub, C. L. Will, M. Gentzel, M. Wilm and R. Luehrmann:
A subset of human 35S U5 proteins, including Prp19, function prior to catalytic step 1 of splicing.
EMBO Journal 23, 2381-2391 (2004)
Strasser, A., A. Dickmanns, U. Schmidt, E. Penka, H. Urlaub, M. Sekine, R. Luehrmann and R. Ficner:
Purification, crystallization and preliminary crystallographic data of the m(3)G cap-binding domain of human snRNP import factor snurportin 1.
Watkins, N. J., I. Lemm, D. Ingelfinger, C. Schneider, M. Hossbach, H. Urlaub and R. Luehrmann:
Assembly and maturation of the U3 snoRNP in the nucleoplasm in a large dynamic multiprotein complex.
Molecular Cell 16, 789-798 (2004)
Will, C. L., C. Schneider, M. Hossbach, H. Urlaub, R. Rauhut, S. M. Elbashir, T. Tuschl and R. Luehrmann:
The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome.
RNA 10, 929-941 (2004)
2003
Bartels, C., H. Urlaub, R. Luehrmann and P. Fabrizio:
Mutagenesis suggests several roles of Snu114p in pre- mRNA splicing.
Journal of Biological Chemistry 278, 28324-28334 (2003)
Feltens, R., M. Gossringer, D. K. Willkomm, H. Urlaub and R. K. Hartmann:
An unusual mechanism of bacterial gene expression revealed for the RNase P protein of Thermus strains.
Proceedings of the National Academy of Sciences of the United States of America 100, 5724-5729 (2003)
Jauch, R., G. P. Bourenkov, H. R. Chung, H. Urlaub, U. Reidt, H. Jaeckle and M. C. Wahl:
The Zinc Finger Associated Domain of the Drosophila Transcription Factor Grauzone is a Novel Zinc-Coordinating Protein-Protein Interaction Module.
Structure 11, 1393-1402 (2003)
Rhode, B., K. Hartmuth, H. Urlaub and R. Luehrmann:
Analysis of site-specific protein-RNA cross-links in isolated RNP complexes, combining affinity selection and mass spectrometry.
RNA-A Publication of the RNA Society 9, 1542-1551 (2003)
2002
Hartmuth, K., H. Urlaub, H. P. Vornlocher, C. L. Will, M. Gentzel, M. Wilm and R. Luehrmann:
Protein composition of human prespliceosomes isolated by a tobramycin affinity-selection method.
Proceedings of the National Academy of Sciences of the United States of America 99, 16719-16724 (2002)
Makarov, E. M., O. Makarova, H. Urlaub, M. Gentzel, C. L. Will, M. Wilm and R. Luehrmann:
Small nuclear ribonucleoprotein remodeling during catalytic activation of the spliceosome.
Science 298, 2205-2208 (2002)
Martinez, J., A. Patkaniowska, H. Urlaub, R. Luehrmann and T. Tuschl:
Single-stranded antisense siRNAs guide target RNA cleavage in RNAi.
Cell 110, 563-574 (2002)
Nottrott, S., H. Urlaub and R. Luehrmann:
Hierarchical, clustered protein interact ions with U4/U6 snRNA: a biochemical role for U4/U6 proteins.
EMBO Journal 21, 5527-5538 (2002)
Urlaub, H., K. Hartmuth and R. Luehrmann:
A two-tracked approach to analyze RNA-protein crosslinking sites in native, nonlabeled small nuclear ribonucleoprotein particles.
Methods 26, 170-181 (2002)
Will, C. L., H. Urlaub, T. Achsel, M. Gentzel, M. Wilm and R. Luehrmann:
Characterization of novel SF3b and 17S U2 snRNP proteins, including a human Prp5p homologue and an SF3b DEAD-box protein.
EMBO Journal 21, 4978-4988 (2002)
2001
Urlaub, H., V. A. Raker, S. Kostka and R. Luehrmann:
Sm protein-Sm site RNA interactions within the inner ring of the spliceosomal snRNP core structure.
EMBO Journal 20, 187-196 (2001)
2000
Urlaub, H., K. Hartmuth, S. Kostka, G. Grelle and R. Luehrmann:
A general approach for identification of RNA-protein crosslinking sites within native human spliceosomal snRNPs: Analysis of RNA-protein contacts in native U 1 and [U 4/U 6.U 5] snRNPs.
Journal of Biological Chemistry 275, 41458-41468 (2000)
1999
Nottrott, S., K. Hartmuth, P. Fabrizio, H. Urlaub, I. Vidovic, R. Ficner and R. Luehrmann:
Functional interaction of a novel 15.5kD [U4/U6.U5]tri-snRNP protein with the 5′-stem-loop of U4 snRNA.
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