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Research Projects
Force Probe Molecular Dynamics
The mechanical properties of icosahedral viral shells
Streptavidin
Unbinding Simulations of the AN02-Antibody-DNP-Hapten Complex
Tension induced titin kinase activation
Ligand Release Pathways and Discrimination in Bombyx mori Pheromone Binding Protein
Molecular dynamics simulations of the F1-ATPase
What is the Role of the Head-Tail Connector During DNA Translocation in Phi 29?
Elasticity of Secondary Structure Elements
Protein Unfolding - Polymer Physics
Aqueous urea solution: structure, energetics, and urea aggregation
Urea Driven Protein Denaturation
Ubiquitin Unfolding and Refolding
Light Driven Polymer Switching
Simulation of AFM Stretching Experiments I: Mechanical Properties of Polysaccharides
Simulation of AFM Stretching Experiments II: Mechanical Properties of Poly-Ethylenglycol (PEG)
Special Systems
Mechanical energy transduction in F1-ATPase
Differential peptide dynamics is linked to MHC polymorphism
Conformational Flexibility of Prions
Photoswitching mechanism of the fluorescent protein asFP595
Systematic Search for a "Back Door" in Acetylcholinesterase
Spontaneous closing of the exportin Cse1p
Aquaporines
Simulation and Interpretation of Experiments
Insulin Aggregation
Structure Ensembles from Solid State NMR
Simulation of Fluorescence Anisotropy Experiments
Theory of dynamic force spectroscopy
FRET
Simulation of Membrane X-ray and Neutron Scattering
DNA/RNA Dynamics, Recognition
DNA Base-Flipping
Predicting the Binding Affinity of the Transcription Factor ZIF268
U4 snRNA Kink-Turn
Membrane Physics, Pores, and Fusion
Selectivity of Aquaporin 1 Against Protons
Aquaporin Efficiency and Selectivity
Molecular Anatomy of Synaptic Vesicles
Conformational Switching Dynamics of Syntaxin 1
Computational Electrophysiology
Gromacs
Effect of Sodium Chloride on Lipid Bilayers
Aquaporin Inhibition
Stiffness of the Juxtamembrane Region of the t-SNARE Syntaxin 1A
Theoretical and Methods Advancements
GeneralizedCorrelations
Constant pH molecular dynamics simulations
usage
CGI
Optimized Scaling for GROMACS
Predicting Unimolecular Chemical Reactions: Chemical Flooding
Predicting Conformational Transitions: Conformational Flooding
Conformational dynamics of proteins
Flooding in Gromacs: Accelerated barrier crossings in molecular dynamics
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Theoretische und computergestützte Biophysik: Einführung (WiSe 2011/2012)
Theoretische und computergestützte Biophysik: Konzepte und Methoden (WiSe 2011/2012)
2011/2012 WiSe: Biophysik II
projects for thesis
Bachelor - Physics
Past Lectures
2011 SoSe: Computergestützte Biophysik II
2010/2011 WiSe: Computergestützte Biophysik I
2010/2011 WiSe: Biophysik II
2009 SoSe: Computergestützte Biophysik II
2009/2010 WiSe: Computergestützte Biophysik I
2009/2010 WiSe: Einführung in die Biophysik II
2008 SoSe: Computergestützte Biophysik II
2008/2009 WiSe: Einführung in die Biophysik II
2008/2009 WiSe: Computergestützte Biophysik I
2007 SoSe: Computergestützte Biophysik II
2007/2008 WiSe: Computergestützte Biophysik I
2006 SoSe: Computersimulation biomolekularer Prozesse
2006/2007 WiSe: Computergestützte Biophysik I
2005 SoSe: Einführung in die Biophysik
2005/2006 WiSe: Computersimulation biomolekularer Prozesse
2004/2005 WiSe: Computersimulation biomolekularer Prozesse
2004/2005 WiSe: Einführung in die Biophysik
2003 SoSe: Theoretische Molekulare Biophysik II
2002/2003 WiSe: Theoretische Molekulare Biophysik I
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