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2009/2010 WiSe: Computergestützte Biophysik I
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Computergestützte Biophysik I (WiSe 2009/10)

Bert de Groot, Gerrit Groenhof und Helmut Grubmüller

Each Monday afternoon, 16:00-18:00, HS 3, A0.105 (physics) or computer room CIP MM, C0.106 (physics) (alternating). Lecture number 530257.

Here you can find the lecture slides and additional course material successively.

Link to the lecture slides and exercises:

linkPfeil http://www.mpibpc.mpg.de/groups/de_groot/compbio1/

Lectures

1. Lecture (20.10.2009) - Introduction: protein structure, molecular dynamics
2. Lecture (02.11.2009) - Tertiary structure, force fields, algorithms
3. Lecture (16.11.2009) - Protein data bank, structure determination by NMR / x-ray; refinement
4. Lecture (30.11.2009) - NMR Spectroscopy, Molecular Dynamics Simulations, BPTI, PCA
5. Lecture (14.12.2009) - Examples from current research
6. Lecture (11.1.2010) - Quantum Chemistry
7. Lecture (25.1.2010) - Hybrid quantum chemsitry/molecular mechanics (QM/MM) simulations of biological systems

Practicals

linkPfeil 1. Practical (27.10.2009) - Introduction to molecular dynamics simulations
linkPfeil 2. Practical (09.11.2009) - Introduction to protein simulation
linkPfeil 3. Practical (23.11.2009) - Introduction to protein structure
linkPfeil 4. Practical: Principal components analysis
linkPfeil 5. Practical: Simulation of a membrane protein


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