Anastassia Stoykova
Anastassia Stoykova
Project Group Leader
Phone:+49 551 201-1710, -1469Fax:+49 551 201-1504

Anastassia Stoykova

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Molecular Developmental Neurobiology

The research interest of the group is focused on molecular mechanisms for patterning and neurogenesis in the developing and adult brain, with a recent emphasis on the neocortex. The neocortex is a mammal-specific region of the cerebrum, acting as an integrative and executive center, which has a critical importance for the human health. The complex organization of the neocortex arises during development from astonishingly few original cells, the neural stem cells, through precisely controlled phases of cell proliferation, differentiation, migration, and death. How a limited number of multipotent neural stem cells generate the immense cell diversity of the adult brain is one of the challenges in neurobiology.

Using the mouse as a model, we are applying a range of cell and molecular biological, biochemical, neuroanatomical, genetic, and transgenic approaches to investigate how specific genetic programs regulate different aspects of mammalian corticogenesis. Specifically, the role of transcription factors Pax6, Scratch2, and Zbtb20 in the establishment of neuronal subtype identity is currently addressed. In a second direction of research, we are interested in understanding the role of subunit composition of the BAF (SWI/SNF) chromatin remodeling complex in cortical neurogenesis in the embryonic and adult brain. The group also seeks to reveal mechanisms of microRNA-dependent regulation of neurogenesis and brain tumor progression.

Background of our research

Fig.1: AMBRA1 regulates autophagy and development of the nervous system. Zoom Image
Fig.1: AMBRA1 regulates autophagy and development of the nervous system.

Cortical neurogenesis is a complex process in which proliferation and differentiation are coordinated with regionalization, axonal pathfinding, areal and layer specification, as well as with cell death. Recently, we have demonstrated that Ambra1, a gene identified in previously performed gene-trap screen, encodes a novel protein that plays a crucial role in brain development by activating Beclin1-regulated autophagy. Consequently, abrogation of the function of Ambra1 causes an imbalance between cell proliferation and cell death, leading to congenital brain malformations, exencephalus and spina bifida (Fig. 1).

Fig. 2: Pax6 regulates the dorsoventral patterning of the mammalian telencephalon. Zoom Image
Fig. 2: Pax6 regulates the dorsoventral patterning of the mammalian telencephalon.

The principal neuronal types of the cortex are the excitatory glutamatergic pyramidal cells, generated by progenitors in the pallial ventricular and subventricular zone. The cortical inhibitory GABA-ergic interneurons are mostly generated in germinal zones of the subpallium, from where they migrate tangentially across the corticostriatal border to reach the cortex. We found that the evolutionarily conserved transcription factor (TF) Pax6 has multiple roles in cortical development, controlling dorsoventral patterning of the embryonic telencephalon, progenitor proliferation, differentiation, establishment of adhesive properties, and axonal projections. For instance, in Pax6 deficiency, a subset of cortical progenitors is molecularly ventralized, generating subcortical interneurons instead of cortical projection neurons causing severe brain malformations (Fig. 2). In the absence of both TFs, Pax6 and Emx2, cortex is not formed and is replaced by tissue with subpallial characteristics.

Fig. 3: Novel genes differentially expressed in cortical regions during late neurogenesis. Zoom Image
Fig. 3: Novel genes differentially expressed in cortical regions during late neurogenesis.

In the neocortex, neurons born at a specific developmental stage and having distinct morphology, transmitter phenotype, and connectivity, are distributed radially into six layers and tangentially in multiple functional domains, each with its own responsibilities. Neurogenesis in developing cortex progresses from the birth of neurons of the lower layers (L6, L5) at early stages to generation of upper layer (L4 - L2) neurons, produced mostly later in development. Emerging evidence suggests that graded expression of TFs acting in a combinatorial mode generates an areal proto-map in the germinal zones that broadly specifies area identities. Subsequently, expression of downstream molecular determinants in the postmitotic neurons controls the acquisition of final areal identity and shapes the axonal connections. Layer and areal formations are interrelated processes. Consistent with a role of intrinsic mechanisms for cortical regionalization, by combination of microarray and in situ hybridization assays we identified and analyzed the function of a number of genes showing a restricted expression in neuronal subsets of distinct cortical domains and layers, implementing important functions (Fig. 3).

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