Publications

Journal Article (140)

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   Mandad, S.; Rahman, R. U.; Centeno, T. P.; Vidal, R. O.; Wildhagen, H.; Rammner, B.; Keihani, S.; Opazo, F.; Urban, I.; Ischebeck, T. et al.; Kirli, K.; Benito, E.; Fischer, A.; Yousefi, R. Y.; Dennerlein, S.; Rehling, P.; Feussner, I.; Urlaub, H.; Bonn, S.; Rizzoli, S. O.; Fornasiero, E. F.: The codon sequences predict protein lifetimes and other parameters of the protein life cycle in the mouse brain. Scientific Reports (2018)
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   Fornasiero, E. F.; Mandad, S.; Wildhagen, H.; Alevra, M.; Rammner, B.; Keihani, S.; Opazo, F.; Urban, I.; Ischebeck, T.; Sakib, M. S. et al.; Fard, M. K.; Kirli, K.; Centeno, T. P.; Vidal, R. O.; Rahman, R. U.; Benito, E.; Fischer, A.; Dennerlein, S.; Rehling, P.; Feussner, I.; Bonn, S.; Simons, M.; Urlaub, H.; Rizzoli, S. O.: Precisely measured protein lifetimes in the mouse brain reveal differences across tissues and subcellular fractions. Nature Communications (2018)
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   Du, Z.; Brewster, R.; Merrill, P. H.; Chmielecki, J.; Francis, J.; Aizer, A.; Abedalthagafi, M.; Sholl, L. M.; Geffers, L.; Alexander, B. et al.; Santagata, S.: Meningioma transcription factors link cell lineage with systemic metabolic cues. Neuro-Oncology 20 (10), pp. 1331 - 1343 (2018)
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   Tchekalarova, J.; Atanasova, D. Y.; Kortenska, L.; Atanasova, M.; Lazarov, N.: Chronic agomelatine treatment prevents comorbid depression in the post-status epilepticus model of acquired epilepsy through suppression of inflammatory signaling. Neurobiology of Disease 115, pp. 127 - 144 (2018)
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   Atanasova, D. Y.; Dandov, A. D.; Dimitrov, N. D.; Lazarov, N. E.: Immunohistochemical localization of angiotensin AT(1) receptors in the rat carotid body. Acta Histochemica 120 (2), pp. 154 - 158 (2018)
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   Atanasova, D. Y.; Tchekalarova, J.; Ivanova, N.; Nenchovska, Z.; Pavlova, E.; Atanassova, N.; Lazarov, N.: Losartan suppresses the kainate-induced changes of angiotensin AT(1) receptor expression in a model of comorbid hypertension and epilepsy. Life Sciences 193, pp. 40 - 46 (2018)
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   Martinez Hernandez, A.; Urbanke, H.; Gillman, A. L.; Lee, J.; Ryazanov, S.; Agbemenyah, H. Y.; Benito, E.; Jain, G.; Kaurani, L.; Grigorian, G. et al.; Leonov, A.; Rezaei-Ghaleh, N.; Wilken, P.; Arce, F. T.; Wagner, J.; Fuhrman, M.; Caruana, M.; Camilleri, A.; Vassallo, N.; Zweckstetter, M.; Benz, R.; Giese, A.; Schneider, A.; Korte, M.; Lal, R.; Griesinger, C.; Eichele, G.; Fischer, A.: The diphenylpyrazole compound anle138b blocks Aβ channels and rescues disease phenotypes in a mouse model for amyloid pathology. EMBO Molecular Medicine 10 (1), pp. 32 - 47 (2018)
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   Dimitrov, N.; Atanasova, D. Y.; Tomov, N.; Sivrev, D.; Lazarov, N.: Acupuncture causes serotonin release by mast cells. Romanian Journal of Morphology and Embryology 58 (3), pp. 961 - 968 (2017)
9. 9.
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   Fan, Z.; Zhao, M.; Joshi, P. D.; Li, P.; Zhang, Y.; Guo, W.; Xu, Y.; Wang, H.; Zhao, Z.; Yan, J.: A class of circadian long non-coding RNAs mark enhancers modulating long-range circadian gene regulation. Nucleic Acids Research 45 (10), pp. 5720 - 5738 (2017)
10. 10.
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    Meyer-Kovac, J.; Kolbe, I.; Ehrhardt, L.; Leliavski, A.; Husse, J. L.; Salinas, G.; Lingner, T.; Tsang, A. H.; Barclay, J. L.; Oster, H.: Hepatic gene therapy rescues high-fat diet responses in circadian Clock mutant mice. Molecular Metabolism 6 (6), pp. 512 - 523 (2017)
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    Kießling, S.; Ucar, A.; Chowdhury, K.; Oster, H.; Eichele, G.: Genetic background-dependent effects of murine micro RNAs on circadian clock function. PLoS One (2017)
12. 12.
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    Schneider, S.; Gruart, A.; Grade, S.; Zhang, Y.; Kröger, S.; Kirchhoff, F.; Eichele, G.; Delgado García, J. M.; Dimou, L.: Decrease in newly generated oligodendrocytes leads to motor dysfunctions and changed myelin structures that can be rescued by transplanted cells. Glia 64 (12), pp. 2201 - 2218 (2016)
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    Kucherenko, M. M.; Ilangovan, V.; Herzig, A.; Shcherbata, H. R.; Bringmann, H.: TfAP-2 is required for night sleep in Drosophila. BMC Neuroscience (2016)
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    Faubel, R.; Westendorf, C.; Bodenschatz, E.; Eichele, G.: Cilia-based flow network in the brain ventricles. Science 353 (6295), pp. 176 - 178 (2016)
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    Schuster-Gossler, K.; Cordes, R.; Müller, J.; Geffers, I.; Delany-Heiken, P.; Taft, M.; Preller, M.; Gossler, A.: Context-dependent sensitivity to mutations disrupting the structural integrity of individual EGF repeats in the mouse Notch ligand DLL1. Genetics (2016)
16. 16.
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    Chen, J.; Shcherbatyy, V.; Liu, Z. J.: Internal kinematics of the volume-reduced tongue: A longitudinal microsonometric study. Anatomical Record 299 (1), pp. 132 - 140 (2016)
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    Husse, J. L.; Eichele, G.; Oster, H.: Synchronization of the mammalian circadian timing system: Light can control peripheral clocks independently of the SCN clock: Alternate routes of entrainment optimize the alignment of the body's circadian clock network with external time. BioEssays 37 (10), pp. 1119 - 1128 (2015)
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    Sisecioglu, M.; Budak, H.; Geffers, L.; Cankaya, M.; Ciftci, M.; Thaller, C.; Eichele, G.; Kufrevioglu, O. I.; Ozdemir, H.: A compendium of expression patterns of cholesterol biosynthetic enzymes in the mouse embryo. Journal of Lipid Research 56 (8), pp. 1551 - 1559 (2015)
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    Landgraf, D.; Tsang, A. H.; Leliavski, A.; Koch, C. E.; Barclay, J. L.; Drucker, D. J.; Oster, H.: Oxyntomodulin regulates resetting of the liver circadian clock by food. eLife (2015)
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    Hammerschmidt, K.; Whelan, G.; Eichele, G.; Fischer, J.: Mice lacking the cerebral cortex develop normal song: Insights into the foundations of vocal learning. Scientific Reports (2015)
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    Romand, R.; Ripp, R.; Poidevin, L.; Boeglin, M.; Geffers, L.; Dollé, P.; Poch, O.: Integrated annotation and analysis of in situ hybridization images using the ImAnno system: Application to the ear and sensory organs of the fetal mouse. PLOS One (2015)
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    Shcherbatyy, V.; Carson, J.; Yaylaoglu, M.; Jäckle, K.; Grabbe, F.; Brockmeyer, M.; Yavuz, H.; Eichele, G.: A digital atlas of ion channel expression patterns in the two-week-old rat brain. Neuroinformatics 13 (1), pp. 111 - 125 (2015)
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    Husse, J. L.; Leliavski, A.; Tsang, A. H.; Oster, H.; Eichele, G.: The light-dark cycle controls peripheral rhythmicity in mice with a genetically ablated suprachiasmatic nucleus clock. The FASEB Journal 28 (11), pp. 4950 - 4960 (2014)
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    Kummer, M. P.; Hammerschmidt, T.; Martinez, A.; Terwel, D.; Eichele, G.; Witten, A.; Figura, S.; Stoll, M.; Schwartz, S.; Pape, H. C. et al.; Schultze, J. L.; Weinshenker, D.; Heneka, M. T.; Urban, I.: Ear2 deletion causes early memory and learning deficits in APP/PS1 mice. Journal of Neuroscience 34 (26), pp. 8845 - 8854 (2014)
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    Cui, X.; Geffers, L.; Eichele, G.; Yan, J.: A computational approach to estimate interorgan metabolic transport in a mammal. PLoS One (2014)
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    Glerup, S.; Olsen, D.; Vaegter, C. B.; Gustafsen, C.; Sjoegaard, S. S.; Hermey, G.; Kjolby, M.; Molgaard, S.; Ulrichsen, M.; Boggild, S. et al.; Skeldal, S.; Fjorback, A. N.; Nyengaard, J. R.; Jacobsen, J.; Bender, D.; Bjarkam, C. R.; Sørensen, E. S.; Füchtbauer, E. M.; Eichele, G.; Madsen, P.; Willnow, T. E.; Petersen, C. M.; Nykjaer, A.: SorCS2 regulates dopaminergic wiring and is processed into an apoptotic two-chain receptor in peripheral glia. Neuron 82 (5), pp. 1074 - 1087 (2014)
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    Jedrusik-Bode, M. A.; Studencka, M.; Smolka, C.; Baumann, T.; Schmidt, H.; Kampf, J.; Paap, F.; Martin, S.; Tazi, J.; Müller, K. M. et al.; Krüger, M.; Braun, T.; Bober, E.: The sirtuin SIRT6 regulates stress granule formation in C. elegans and mammals. Journal of Cell Science 126, pp. 5166 - 5177 (2013)
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    Leliavski, A.; Shostak, A.; Husse, J. L.; Oster, H.: Impaired glucocorticoid production and response to stress in Arntl-deficient male mice. Endocrinology (2013)
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    Wirth, M.; Karaca, S.; Wenzel, D.; Ho, L.; Tishkoff, D.; Lombard, D. B.; Verdin, E.; Urlaub, H.; Jedrusik-Bode, M.; Fischle, W.: Mitochondrial SIRT4-type proteins in Caenorhabditis elegans and mammals interact with pyruvate carboxylase and other acetylated biotin-dependent carboxylases. Mitochondrion 13 (6), pp. 705 - 720 (2013)
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    Jedrusik-Bode, M.: Histone H1 and heterochromatin protein 1 (HP1) regulate specific gene expression and not global transcription. Worm 2 (2), e23703 (2013)
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    Husse, J. L.; Leliavski, A.; Oster, H.: Zirkadiane Uhren in Gehirn und Peripherie: biologische Funktion und Relevanz für die Klinik. Deutsche Medizinische Wochenschrift 138 (10), pp. 493 - 496 (2013)
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    Hammerschmidt, T.; Kummer, M. P.; Terwel, D.; Martinez, A.; Gorji, A.; Pape, H. C.; Rommelfanger, K. S.; Schroeder, J. P.; Stoll, M.; Schultze, J. et al.; Weinshenker, D.; Heneka, M. T.: Selective loss of noradrenaline exacerbates early cognitive dysfunction and synaptic deficits in APP/PS1 mice. Biological Psychiatry 73 (5), pp. 454 - 463 (2013)
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    Geffers, L.; Tetzlaff, B.; Cui, X.; Yan, J.; Eichele, G.: METscout: A pathfinder exploring the landscape of metabolites, enzymes and transporters. Nucleic Acids Research 41 (D1), pp. D1047 - D1054 (2013)
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    Husse, J. L.; Hintze, S. C.; Eichele, G.; Lehnert, H.; Oster, H.: Circadian clock genes Per1 and Per2 regulate the response of metabolism-associated transcripts to sleep disruption. PLoS One (2012)
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    Zhang, L. Y.; Abraham, D.; Lin, S. T.; Oster, H.; Eichele, G.; Fu, Y. H.; Ptacek, L. J.: PKCγ participates in food entrainment by regulating BMAL1. Proceedings of the National Academy of Sciences of the United States of America 109 (50), pp. 20679 - 20684 (2012)
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    Geffers, L.; Hermann, B.; Eichele, G.: Web-based digital gene expression atlases for the mouse. Mammalian Genome 23 (9-10), pp. 525 - 538 (2012)
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    Studencka, M.; Wesolowski, R.; Opitz, L.; Salinas-Riester, G.; Wisniewski, J. R.; Jedrusik-Bode, M. A.: Transcriptional repression of Hox genes by C. elegans HP1/HPL and H1/HIS-24. PLoS Genetics (2012)
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    Barclay, J. L.; Husse, J. L.; Bode, B.; Naujokat, N.; Meyer-Kovac, J.; Schmid, S. M.; Lehnert, H.; Oster, H.: Circadian desynchrony promotes metabolic disruption in a mouse model of shiftwork. PLoS One 7 (5), e37150 (2012)
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    Whelan, G.; Kreidl, E.; Wutz, G.; Egner, A.; Peters, J. M.; Eichele, G.: Cohesin acetyltransferase Esco2 is a cell viability factor and is required for cohesion in pericentric heterochromatin. EMBO Journal 31 (1), pp. 71 - 82 (2012)
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    Studencka, M.; Konzer, A.; Moneron, G.; Wenzel, D.; Opitz, L.; Salinas-Riester, G.; Bedet, C.; Krüger, M.; Hell, S. W.; Wisniewski, J. R. et al.; Schmidt, H.; Palladino, F.; Schulze, E.; Jedrusik-Bode, M. A.: Novel roles of Caenorhabditis elegans heterochromatin protein HP1 and linker histone in the regulation of innate immune gene expression. Molecular and Cellular Biology 32 (2), pp. 251 - 265 (2012)
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    Whelan, G.; Kreidl, E.; Peters, J. M.; Eichele, G.: The non-redundant function of cohesin acetyltransferase Esco2: some answers and new questions. Nucleus 3 (4), pp. 1 - 5 (2012)
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    Antypa, M.; Faux, C.; Eichele, G.; Parnavelas, J. P.; Andrews, W. D.: Differential gene expression in migratory streams of cortical interneurons. European Journal of Neuroscience 34 (10), pp. 1584 - 1594 (2011)
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    Husse, J.; Zhou, X.; Shostak, A.; Oster, H.; Eichele, G.: Synaptotagmin10-Cre, a driver to disrupt clock genes in the SCN. Journal of Biological Rhythms 26 (5), pp. 379 - 389 (2011)
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    Barclay, J. L.; Husse, J. L.; Oster, H.: Adrenal glucocorticoids as a target for jet lag therapies. Expert Review of Endocrinology and Metabolism (2011)
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    Wenzel, D.; Palladino, F.; Jedrusik-Bode, M.: Epigenetics in C. elegans: Facts and challenges. Genesis 49 (8), pp. 647 - 661 (2011)
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    Eichele, G.; Diez-Roux, G.: High-throughput analysis of gene expression on tissue sections by in situ hybridization. Methods 53 (4), pp. 417 - 423 (2011)
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    Diez-Roux, G.; Banfi, S.; Sultan, M.; Geffers, L.; Anand, S.; Rozado, D.; Magen, A.; Canidio, E.; Pagani, M.; Peluso, I. et al.; Lin-Marq, N.; Koch, M.; Bilio, M.; Cantiello, I.; Verde, R.; De Masi, C.; Bianchi, S. A.; Cicchini, J.; Perroud, E.; Mehmeti, S.; Dagand, E.; Schrinner, S.; Nürnberger, A.; Schmidt, K.; Metz, K.; Zwingmann, C.; Brieske, N.; Springer, C.; Martinez Hernandez, A.; Herzog, S.; Grabbe, F.; Sieverding, C.; Fischer, B.; Schrader, K.; Brockmeyer, M.; Dettmer, S.; Helbig, C.; Alunni, V.; Battaini, M. A.; Mura, C.; Henrichsen, C. N.; Garcia-Lopez, R.; Echevvaria, D.; Puelles, E.; Garcia-Galero, E.; Kruse, S.; Uhr, M.; Kauck, C.; Feng, G.; Milyaev, N.; Ong, C. K.; Kumar, L.; Lam, M.; Semple, C. A.; Gyenesei, A.; Mundlos, S.; Radelof, U.; Lehrach, H.; Sarmientos, P.; Reymond, A.; Davidson, D. R.; Dolle, P.; Antonarakis, S. E.; Yaspo, M. L.; Martinez, S.; Baldock, R. A.; Eichele, G.; Ballbio, A.: A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biology (2011)
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    Tanaka, K.; Terryn, S.; Geffers, L.; Garbay, S.; Pontoglio, M.; Devuyst, O.: The transcription factor HNF1 alpha regulates expression of chloride-proton exchanger ClC-5 in the renal proximal tubule. American Journal of Physiology-Renal Physiology 299 (6), pp. F1339 - F1347 (2010)
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    Heneka, M. T.; Nadrigny, F.; Regen, T.; Martinez- Hernandez, A.; Dumitrescu-Ozimek, L.; Terwel, D.; Jardanhazi-Kurutz, D.; Walter, J.; Kirchhoff, F.; Hanisch, U. K. et al.; Kummer, M. P.: Locus ceruleus controls Alzheimer's disease pathology by modulating microglial functions through norepinephrine. Proceedings of the National Academy of Sciences of the United States of America 107 (13), pp. 6058 - 6083 (2010)
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    Carson, J.; Ju, T.; Bello, M.; Thaller, C.; Warren, J.; Kakadiaris, I. A.; Chiu, W.; Eichele, G.: Automated pipeline for atlas-based annotation of gene expression patterns: Application to postnatal day 7 mouse brain. Methods 50 (2), pp. 85 - 95 (2010)
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    Enjin, A.; Rabe, N.; Nakanishi, S. T.; Vallstedt, A.; Gezelius, H.; Memic, F.; Lind, M.; Hjalt, T.; Tourtellotte, W. G.; Bruder, C. et al.; Eichele, G.; Whelan, P. J.; Kullander, K.: Identification of novel spinal cholinergic genetic subtypes disclose Chodl and Pitx2 as markers for fast motor neurons and partition cells. The Journal of Comparative Neurology 518 (2), pp. 2284 - 2304 (2010)
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    Kiessling, S.; Eichele, G.; Oster, H.: Adrenal glucocorticoids have a key role in circadian resynchronization in a mouse model of jet lag. Journal of Clinical Investigation 120 (7), pp. 2600 - 2609 (2010)
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    Santagata, S.; Maire, C. L.; Idbaih, A.; Geffers, L.; Correll, M.; Holton, K.; Quackenbush, J.; Ligon, K. L.: CRX is a diagnostic marker of retinal and pineal lineage tumors. PLoS ONE 4 (11), e7932 (2009)
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    Kovac, J.; Husse, J.; Oster, H.: A time to fast, a time to feast: The crosstalk between metabolism and the circadian clock. Molecules and Cells 28, pp. 75 - 80 (2009)
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    Wirth, M.; Jedrusik-Bode, M. A.: Interplay between histone deacetylase SIR-2, linker histone H1 and histone methyltransferases in heterochromatin formation. Epigenetics 4 (6), pp. 353 - 356 (2009)
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    Zielinska, D. F.; Gnad, F.; Jedrusik-Bode, M.; Wiesniwski, J. R.; Mann, M.: Caenorhabditis elegans has a phosphoproteome atypical for metazoans that is enriched in developmental and sex determination proteins. Journal of Proteome Research 8 (8), pp. 4039 - 4049 (2009)
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    Wirth, M.; Paap, F.; Fischle, W.; Wenzel, D.; Agafonov, D. E.; Samatov, T. R.; Wisniewski, J. R.; Jedrusik-Bode, M.: HIS-24 linker histone and SIR-2.1 deacetylase induce H3K27me3 in Caenorhabditis elegans germ line. Molecular and Cellular Biology 29 (13), pp. 3700 - 3709 (2009)
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    Schuchardt, J. P.; Wahlstrom, D.; Ruegg, J.; Giese, N.; Stefan, M.; Hopf, H.; Pongratz, I.; Hakansson, H.; Eichele, G.; Pettersson, K. et al.; Nau, H.: The endogenous retinoid metabolite S-4-oxo-9-cis-13,14-dihydro-retinoic acid activates retinoic acid receptor signalling both in vitro and in vivo. FEBS Journal 2776 (11), pp. 3043 - 3059 (2009)
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    Szabo, N.; Zhao, T.; Zhou, X.; Alvarez-Bolado, G.: Role of neuroepithelial sonic hedgehog in hypothalamic patterning. Journal of Neuroscience 29 (21), pp. 6989 - 7002 (2009)
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    Parreira, K. S.; Debaix, H.; Cnops, Y.; Geffers, L.; Devuyst, O.: Expression patterns of the aquaporin gene family during renal development: influence of genetic variability. Pfluegers Archiv-European Journal of Physiology 458, pp. 745 - 759 (2009)
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    Szabo, N.; Zhao, T.; Zhou, X.; Alvarez-Bolado, G.: The role of Sonic hedgehog of neural origin in thalamic differentiation in the mouse. Journal of Neuroscience 29 (8), pp. 2453 - 2466 (2009)
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    Zhao, T.; Szabo, N.; Ma, J.; Luo, L.; Zhou, X.; Alvarez-Bolado, G.: Genetic mapping of Foxb1-cell lineage shows migration from caudal diencephalon to telencephalon and lateral hypothalamus. European Journal of Neuroscience 28 (10), pp. 1941 - 1955 (2008)
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    Balastik, M.; Ferraguti, F.; Pires da Silva, A.; Lee, T. H.; Alvarez-Bolado, G.; Lu, K. P.; Gruss, P.: Deficiency in ubiquitin ligase TRIM2 causes accumulation of neurofilament light chain and neurodegeneration. Proceedings of the National Academy of Sciences of the United States of America 105 (33), pp. 12016 - 12021 (2008)
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    Hermann-Kleiter, N.; Gruber, T.; Lutz-Nicoladoni, C.; Thuille, N.; Fresser, F.; Labi, V.; Schiefermeier, N.; Warnecke, M.; Huber, L.; Villunger, A. et al.; Eichele, G.; Kaminski, S.; Baier, G.: The nuclear orphan receptor NR2F6 suppresses lymphocyte activation and T Hhlper 17-dependent autoimmunity. Immunity 29 (2), pp. 205 - 216 (2008)
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    Rossner, M. J.; Oster, H.; Wichert, S. P.; Reinecke, L.; Wehr, M. C.; Reinecke, J.; Eichele, G.; Taneja, R.; Nave, K. A.: Disturbed clockwork resetting in Sharp-1 and Sharp-2 single and double mutant mice. PLoS One 3 (7), e2762 (2008)
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    Andreas, S.; Eichele, G.: Sleep apnoea: time to consider clock genes. European Respiratory Journal 32 (1), pp. 1 - 2 (2008)
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    Eichele, G.: High throughputisation continues in situ hybridisation and immunohistochemistry at large-scale. Screening 4, pp. 22 - 24 (2008)
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    Raciti, D.; Reggiani, L.; Geffers, L.; Jiang, Q.; Bacchion, F.; Subrizi, A. E.; Clements, D.; Tindal, C.; Davidson, D. R.; Kaissling, B. et al.; Braendli, A. W.: Organization of the pronephric kidney revealed by large-scale gene expression mapping. Genome Biology 9 (5), R84 (2008)
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    Zhao, T.; Zhou, X.; Szabo, N.; Leitges, M.; Alvarez-Bolado, G.: Foxb1-driven Cre expression in somites and the neuroepithelium of diencephalon, brainstem, and spinal cord. Genesis 45 (12), pp. 781 - 787 (2007)
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    Visel, A.; Carson, J.; Oldekamp, J.; Warnecke, M.; Jakubcakova, V.; Zhou, X.; Shaw, C. A.; Alvarez-Bolado, G.; Eichele, G.: Regulatory pathways analysis by high-throughput in Situ hybridization. PLoS Genetics 3 (10), pp. 1867 - 1883 (2007)
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    Cankaya, M.; Martinez Hernandez, A.; Ciftci, M.; Beydemir, S.; Oezdemir, H.; Budak, H.; Gulcin, I.; Comakli, V.; Emircupani, T.; Ekinci, D. et al.; Kuzu, M.; Jiang, Q.; Eichele, G.; Kufrevioglu, O. I.: An analysis of expression patterns of genes encoding proteins with catalytic activities. BMC Genomics 8, 232 (2007)
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    Jakubcakova, V.; Oster, H.; Tamanini, F.; Cadenas, C.; Leitges, M.; van der Horst, G. T.; Eichele, G.: Light entrainment of the mammalian circadian clock by a PRKCA-dependent posttranslational mechanism. Neuron 54, pp. 831 - 843 (2007)
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