Publikationen

101.

Zeitschriftenartikel

Zacher, B.; Michel, M.; Schwalb, B.; Cramer, P.; Tresch, A.; Gagneur, J.: Accurate promoter and enhancer identification in 127 ENCODE and roadmap epigenomics cell types and tissues by GenoSTAN. PLoS One 12 (1), e0169249 (2017)

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102.

Zeitschriftenartikel

Hantsche, M.; Cramer, P.: Structural basis of transcription: 10 years after the Nobel Prize in Chemistry. Angewandte Chemie International Edition 55 (52), S. 15972 - 15981 (2016)

MPG.PuRe

103.

Zeitschriftenartikel

Neyer, S.; Kunz, M.; Geiss, C.; Hantsche, M.; Hodirnau, V. V.; Seybert, A.; Engel, C.; Scheffer, M. P.; Cramer, P.; Frangakis, A. S.: Structure of RNA polymerase I transcribing ribosomal DNA genes. Nature 540 (7634), S. 607 - 610 (2016)

MPG.PuRe

104.

Zeitschriftenartikel

Fitz, V.; Shin, J.; Ehrlich, C.; Farnung, L.; Cramer, P.; Zaburdaev, V.; Grill, S. W.: Nucleosomal arrangement affects single-molecule transcription dynamics. Proceedings of the National Academy of Sciences of the United States of America 113 (45), S. 12733 - 12738 (2016)

MPG.PuRe

105.

Zeitschriftenartikel

Hillenbrand, P.; Maier, K. C.; Cramer, P.; Gerland, U.: Inference of gene regulation functions from dynamic transcriptome data. eLife 5, e12188 (2016)

MPG.PuRe

106.

Zeitschriftenartikel

Shao, W.; Zumer, K.; Fujinaga, K.; Peterlin, B. M.: FBXO3 protein promotes ubiquitylation and transcriptional activity of AIRE (Autoimmune Regulator). Journal of Biological Chemistry 291 (34), S. 17953 - 17963 (2016)

MPG.PuRe

107.

Zeitschriftenartikel

Cramer, P.: Structure determination of transient transcription complexes. Biochemical Society Transactions 44 (4), S. 1177 - 1182 (2016)

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108.

Zeitschriftenartikel

Engel, C.; Plitzko, J.; Cramer, P.: RNA polymerase I-Rrn3 complex at 4.8 Å resolution. Nature Communications 7, 12129 (2016)

MPG.PuRe

109.

Zeitschriftenartikel

Plaschka, C.; Nozawa, K.; Cramer, P.: Mediator architecture and RNA polymerase II interaction. Journal of Molecular Biology 428 (12), S. 2569 - 2574 (2016)

MPG.PuRe

110.

Zeitschriftenartikel

Vos, S. M.; Pöllmann, D.; Caizzi, L.; Hofmann, K. B.; Rombaut, P.; Zimniak, T.; Herzog, F.; Cramer, P.: Architecture and RNA binding of the human negative elongation factor. eLife 5, e14981 (2016)

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111.

Zeitschriftenartikel

Schwalb, B.; Michel, M.; Zacher, B.; Frühauf, K.; Demel, C.; Tresch, A.; Gagneur, J.; Cramer, P.: TT-seq maps the human transient transcriptome. Science 352 (6290), S. 1225 - 1228 (2016)

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112.

Zeitschriftenartikel

Plaschka, C.; Hantsche, M.; Dienemann, C.; Burzinski, C.; Plitzko, J.; Cramer, P.: Transcription initiation complex structures elucidate DNA opening. Nature 533 (7603), S. 353 - 358 (2016)

MPG.PuRe

113.

Zeitschriftenartikel

Lisica, A.; Engel, C.; Jahnel, M.; Roldán, É.; Galburt, E. A.; Cramer, P.; Grill, S. W.: Mechanisms of backtrack recovery by RNA polymerases I and II. Proceedings of the National Academy of Sciences of the United States of America 113 (11), S. 2946 - 2951 (2016)

MPG.PuRe

114.

Zeitschriftenartikel

Niesser, J.; Wagner, F. R.; Kostrewa, D.; Mühlbacher, W.; Cramer, P.: Structure of GPN-loop GTPase Npa3 and implications for RNA polymerase II assembly. Molecular and Cellular Biology 36 (5), S. 820 - 831 (2016)

MPG.PuRe

115.

Zeitschriftenartikel

Eser, P.; Wachutka, L.; Maier, K. C.; Demel, C.; Boroni, M.; Iyer, S.; Cramer, P.; Gagneur, J.: Determinants of RNA metabolism in the Schizosaccharomyces pombe genome. Molecular Systems Biology 12 (2), 857 (2016)

MPG.PuRe

116.

Zeitschriftenartikel

Schüller, R.; Forné, I.; Straub, T.; Schreieck, A.; Texier, Y.; Shah, N.; Decker, T. M.; Cramer, P.; Imhof, A.; Eick, D.: Heptad-specific phosphorylation of RNA polymerase II CTD. Molecular Cell 61 (2), S. 305 - 314 (2016)

MPG.PuRe

117.

Zeitschriftenartikel

Mühlbacher, W.; Mayer, A.; Sun, M.; Remmert, M.; Cheung, A. C. M.; Niesser, J.; Söding, J.; Cramer, P.: Structure of Ctk3, a subunit of the RNA polymerase II CTD kinase complex, reveals a non-canonical CTD-interacting domain fold. Proteins: Structure, Function, and Bioinformatics 83 (10), S. 1849 - 1858 (2015)

MPG.PuRe

118.

Zeitschriftenartikel

Kostrewa, D.; Kuhn, C. D.; Engel, C.; Cramer, P.: An alternative RNA polymerase I structure reveals a dimer hinge. Acta Crystallographica D 71 (9), S. 1850 - 1855 (2015)

MPG.PuRe

119.

Zeitschriftenartikel

Martinez-Rucobo, F. W.; Kohler, R.; Waterbeemd, M. v. d.; Heck, A. J.; Hemann, M.; Herzog, F.; Stark, H.; Cramer, P.: Molecular basis of transcription-coupled pre-mRNA capping. Molecular Cell 58 (6), S. 1079 - 1089 (2015)

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120.

Zeitschriftenartikel

Morozov, Y. I.; Parshin, A. V.; Agaronyan, K.; Cheung, A. C.; Anikin, M.; Cramer, P.; Temiakov, D.: A model for transcription initiation in human mitochondria. Nucleic Acids Research 43 (7), S. 3726 - 3735 (2015)

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121.

Zeitschriftenartikel

Sainsbury, S.; Bernecky, C.; Cramer, P.: Structural basis of transcription initiation by RNA polymerase II. Nature Reviews Molecular Cell Biology 16 (3), S. 129 - 143 (2015)

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122.

Zeitschriftenartikel

Plaschka, C.; Larivière, L.; Wenzeck, L.; Seizl, M.; Hemann, M.; Tegunov, D.; Petrotchenko, E. V.; Borchers, C. H.; Baumeister, W.; Herzog, F. et al.; Villa, E.; Cramer, P.: Architecture of the RNA polymerase II–Mediator core initiation complex. Nature 518 (7539), S. 376 - 380 (2015)

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123.

Zeitschriftenartikel

Borck, G.; Hög, F.; Dentici, M. L.; Tan, P. L.; Sowada, N.; Medeira, A.; Gueneau, L.; Thiele, H.; Kousi, M.; Lepri, F. et al.; Wenzeck, L.; Blumenthal, I.; Radicioni, A.; Schwarzenberg, T. L.; Mandriani, B.; Fischetto, R.; Morris-Rosendahl, D. J.; Altmüller, J.; Reymond, A.; Nürnberg, P.; Merla, G.; Dallapiccola, B.; Katsanis, N.; Cramer, P.; Kubisch, C.: BRF1 mutations alter RNA polymerase III-dependent transcription and cause neurodevelopmental anomalies. Genome Research 25 (2), S. 155 - 166 (2015)

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124.

Zeitschriftenartikel

Zacher, B.; Lidschreiber, M.; Cramer, P.; Gagneur, J.; Tresch, A.: Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle. Molecular Systems Biology 10 (12), 768 (2014)

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125.

Zeitschriftenartikel

Cramer, P.: A tale of chromatin and transcription in 100 structures. Cell 159 (5), S. 985 - 994 (2014)

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126.

Zeitschriftenartikel

Bäjen, C.; Torkler, P.; Gressel, S.; Essig, K.; Söding, J.; Cramer, P.: Transcriptome maps of mRNP biogenesis factors define pre-mRNA recognition. Molecular Cell 55 (5), S. 745 - 757 (2014)

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127.

Zeitschriftenartikel

Tudek, A.; Porrua, O.; Kabzinski, T.; Lidschreiber, M.; Kubicek, K.; Fortova, A.; Lacroute, F.; Vanakova, S.; Cramer, P.; Stefl, R. et al.; Libri, D.: Molecular basis for coordinating transcription termination with noncoding RNA degradation. Molecular Cell 55 (3), S. 467 - 481 (2014)

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128.

Zeitschriftenartikel

Mühlbacher, W.; Sainsbury, S.; Hemann, M.; Hantsche, M.; Neyer, S.; Herzog, F.; Cramer, P.: Conserved architecture of the core RNA polymerase II initiation complex. Nature Communications 5, 4310 (2014)

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129.

Zeitschriftenartikel

Sydow, J. F.; Lipsmeier, F.; Larraillet, V.; Hilger, M.; Mautz, B.; Mølhøj, M.; Kuentzer, J.; Klostermann, S.; Schoch, J.; Voelger, H. R. et al.; Regula, J. T.; Cramer, P.; Papadimitriou, A.; Kettenberger, H.: Structure-based prediction of asparagine and aspartate degradation sites in antibody variable regions. PLoS One 9 (6), e100736 (2014)

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130.

Zeitschriftenartikel

Schulz, D.; Pirkl, N.; Lehmann, E.; Cramer, P.: Rpb4 functions mainly in mRNA synthesis by RNA polymerase II. Journal of Biological Chemistry 289 (25), S. 17446 - 17452 (2014)

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131.

Zeitschriftenartikel

Hirschmann, W. D.; Westendorf, H.; Mayer, A.; Cannarozzi, G.; Cramer, P.; Jansen, R. P.: Scp160p is required for translational efficiency of codon-optimized mRNAs in yeast. Nucleic Acids Research 42 (6), S. 4043 - 4055 (2014)

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132.

Zeitschriftenartikel

Morozov, Y. I.; Agaronyan, K.; Cheung, A. C. M.; Anikin, M.; Cramer, P.; Temiakov, D.: A novel intermediate in transcription initiation by human mitochondrial RNA polymerase. Nucleic Acids Research 42 (6), S. 3884 - 3893 (2014)

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133.

Zeitschriftenartikel

Schreieck, A.; Easter, A. D.; Etzold, S.; Wiederhold, K.; Lidschreiber, M.; Cramer, P.; Passmore, L. A.: RNA polymerase II termination involves C-terminal-domain tyrosine dephosphorylation by CPF subunit Glc7. Nature Structural and Molecular Biology 21 (2), S. 175 - 179 (2014)

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134.

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Eser, P.; Demel, C.; Maier, K. C.; Schwalb, B.; Pirkl, N.; Martin, D. E.; Cramer, P.; Tresch, A.: Periodic mRNA synthesis and degradation co-operate during cell cycle gene expression. Molecular Systems Biology 10 (1), 717 (2014)

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135.

Zeitschriftenartikel

Meinel, D. M.; Burkert-Kautzsch, C.; Kieser, A.; O'Duibhir, E.; Siebert, M.; Mayer, A.; Cramer, P.; Söding, J.; Holstege, F. C.; Sträßer, K.: Recruitment of TREX to the transcription machinery by its direct binding to the phospho-CTD of RNA polymerase II. PLoS Genetics 9 (11), e1003914 (2013)

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136.

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Schulz, D.; Schwalb, B.; Kiesel, A.; Baejen, C.; Torkler, P.; Gagneur, J.; Söding, J.; Cramer, P.: Transcriptome surveillance by selective termination of noncoding RNA synthesis. Cell 155 (5), S. 1075 - 1087 (2013)

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137.

Zeitschriftenartikel

Heo, D.-h.; Yoo, I.; Kong, J.; Lidschreiber, M.; Mayer, A.; Choi, B.-Y.; Hahn, Y.; Cramer, P.; Buratowski, S.; Kim, M.: The RNA polymerase II C-terminal domain-interacting domain of yeast Nrd1 contributes to the choice of termination pathway and couples to RNA processing by the nuclear exosome. Journal of Biological Chemistry 288 (51), S. 36676 - 36690 (2013)

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138.

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Engel, C.; Sainsbury, S.; Cheung, A. C.; Kostrewa, D.; Cramer, P.: RNA polymerase I structure and transcription regulation. Nature 502 (7473), S. 650 - 655 (2013)

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139.

Zeitschriftenartikel

Sun, M.; Schwalb, B.; Pirkl, N.; Maier, K. C.; Schenk, A.; Failmezger, H.; Tresch, A.; Cramer, P.: Global analysis of eukaryotic mRNA degradation reveals Xrn1-dependent buffering of transcript levels. Molecular cell 52 (1), S. 52 - 62 (2013)

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140.

Zeitschriftenartikel

Schwinghammer, K.; Cheung, A. C. M.; Morozov, Y. I.; Agaronyan, K.; Temiakov, D.; Cramer, P.: Structure of human mitochondrial RNA polymerase elongation complex. Nature Structural and Molecular Biology 20 (11), S. 1298 - 1303 (2013)

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141.

Zeitschriftenartikel

Kinkelin, K.; Wozniak, G. G.; Rothbart, S. B.; Lidschreiber, M.; Strahl, B. D.; Cramer, P.: Structures of RNA polymerase II complexes with Bye1, a chromatin-binding PHF3/DIDO homologue. Proceedings of the National Academy of Sciences of the USA 110 (38), S. 15277 - 15282 (2013)

MPG.PuRe

142.

Zeitschriftenartikel

Larivière, L.; Plaschka, C.; Seizl, M.; Petrotchenko, E. V.; Wenzeck, L.; Borchers, C. H.; Cramer, P.: Model of the Mediator middle module based on protein cross-linking. Nucleic Acids Research 41 (20), S. 9266 - 9273 (2013)

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143.

Zeitschriftenartikel

Lidschreiber, M.; Leike, K.; Cramer, P.: Cap completion and C-terminal repeat domain kinase recruitment underlie the initiation-elongation transition of RNA polymerase II. Molecular and cellular biology 33 (19), S. 3805 - 3816 (2013)

MPG.PuRe

144.

Zeitschriftenartikel

Fouqueau, T.; Zeller, M. E.; Cheung, A. C.; Cramer, P.; Thomm, M.: The RNA polymerase trigger loop functions in all three phases of the transcription cycle. Nucleic acids research 41 (14), S. 7048 - 7059 (2013)

MPG.PuRe

145.

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Michel, M.; Cramer, P.: Transitions for regulating early transcription. Cell 153 (5), S. 943 - 944 (2013)

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146.

Zeitschriftenartikel

Esslinger, S. M.; Schwalb, B.; Helfer, S.; Michalik, K. M.; Witte, H.; Maier, K. C.; Martin, D.; Michalke, B.; Tresch, A.; Cramer, P. et al.; Förstemann, K.: Drosophila miR-277 controls branched-chain amino acid catabolism and affects lifespan. RNA Biology 10 (6), S. 1042 - 1056 (2013)

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147.

Zeitschriftenartikel

Bernecky, C.; Cramer, P.: Struggling to let go: A non‐coding RNA directs its own extension and destruction. EMBO Journal 32 (6), S. 771 - 772 (2013)

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148.

Zeitschriftenartikel

Sainsbury, S.; Niesser, J.; Cramer, P.: Structure and function of the initially transcribing RNA polymerase II–TFIIB complex. Nature 493 (7432), S. 437 - 440 (2013)

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149.

Zeitschriftenartikel

Martinez-Rucobo, F. W.; Cramer, P.: Structural basis of transcription elongation. Biochimica et Biophysica Acta - Gene Regulatory Mechanisms 1829 (1), S. 9 - 19 (2013)

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150.

Zeitschriftenartikel

Larivière, L.; Plaschka, C.; Seizl, M.; Wenzeck, L.; Kurth, F.; Cramer, P.: Structure of the Mediator head module. Nature 492 (7429), S. 448 - 451 (2012)

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151.

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Miller, C.; Matic, I.; Maier, K. C.; Schwalb, B.; Roether, S.; Strässer, K.; Tresch, A.; Mann, M.; Cramer, P.: Mediator phosphorylation prevents stress response transcription during non-stress conditions. Journal of Biological Chemistry 287 (53), S. 44017 - 44026 (2012)

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152.

Zeitschriftenartikel

Wu, C.-C.; Herzog, F.; Jennebach, S.; Lin, Y.-C.; Pai, C.-Y.; Aebersold, R.; Cramer, P.; Chen, H.-T.: RNA polymerase III subunit architecture and implications for open promoter complex formation. Proceedings of the National Academy of Sciences of the USA 109 (47), S. 19232 - 19237 (2012)

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153.

Zeitschriftenartikel

Dümcke, S.; Seizl, M.; Etzold, S.; Pirkl, N.; Martin, D. E.; Cramer, P.; Tresch, A.: One Hand Clapping: detection of condition-specific transcription factor interactions from genome-wide gene activity data. Nucleic Acids Research 40 (18), S. 8883 - 8892 (2012)

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154.

Zeitschriftenartikel

Mayer, A.; Heidemann, M.; Lidschreiber, M.; Schreieck, A.; Sun, M.; Hintermair, C.; Kremmer, E.; Eick, D.; Cramer, P.: CTD tyrosine phosphorylation impairs termination factor recruitment to RNA polymerase II. Science 336 (6089), S. 1723 - 1725 (2012)

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155.

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Cheung, A. C. M.; Cramer, P.: A movie of RNA polymerase II transcription. Cell 149 (7), S. 1431 - 1437 (2012)

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156.

Zeitschriftenartikel

Niederberger, T.; Etzold, S.; Lidschreiber, M.; Maier, K. C.; Martin, D. E.; Fröhlich, H.; Cramer, P.; Tresch, A.: MC EMiNEM maps the interaction landscape of the Mediator. PLoS Computational Biology 8 (6), e1002568 (2012)

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157.

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Treutlein, B.; Muschielok, A.; Andrecka, J.; Jawhari, A.; Buchen, C.; Kostrewa, D.; Hög, F.; Cramer, P.; Michaelis, J.: Dynamic architecture of a minimal RNA polymerase II open promoter complex. Molecular Cell 46 (2), S. 136 - 146 (2012)

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158.

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Walmacq, C.; Cheung, A. C. M.; Kireeva, M. L.; Lubkowska, L.; Ye, C.; Gotte, D.; Strathern, J. N.; Carell, T.; Cramer, P.; Kashlev, M.: Mechanism of translesion transcription by RNA polymerase II and its role in cellular resistance to DNA damage. Molecular Cell 46 (1), S. 18 - 29 (2012)

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159.

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Sun, M.; Schwalb, B.; Schulz, D.; Pirkl, N.; Etzold, S.; Larivière, L.; Maier, K. C.; Seizl, M.; Tresch, A.; Cramer, P.: Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation. Genome Research 22 (7), S. 1350 - 1359 (2012)

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160.

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Koschubs, T.; Dengl, S.; Dürr, H.; Kaluza, K.; Georges, G.; Hartl, C.; Jennewein, S.; Lanzendörfer, M.; Auer, J.; Stern, A. et al.; Huang, K.‑.; Packman, K.; Gubler, U.; Kostrewa, D.; Ries, S.; Hansen, S.; Kohnert, U.; Cramer, P.; Mundigl, O.: Allosteric antibody inhibition of human hepsin protease. Biochemical Journal 442 (3), S. 483 - 494 (2012)

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161.

Zeitschriftenartikel

Jennebach, S.; Herzog, F.; Aebersold, R.; Cramer, P.: Crosslinking-MS analysis reveals RNA polymerase I domain architecture and basis of rRNA cleavage. Nucleic Acids Research 40 (12), S. 5591 - 5601 (2012)

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162.

Zeitschriftenartikel

Wild, T.; Cramer, P.: Biogenesis of multisubunit RNA polymerases. Trends in Biochemical Sciences 37 (3), S. 99 - 105 (2012)

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163.

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Vannini, A.; Cramer, P.: Conservation between the RNA polymerase I, II, and III transcription initiation machineries. Molecular Cell 45 (4), S. 439 - 446 (2012)

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164.

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Larivière, L.; Seizl, M.; Cramer, P.: A structural perspective on Mediator function. Current Opinion in Cell Biology 24 (3), S. 305 - 313 (2012)

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165.

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Mayer, A.; Schreieck, A.; Lidschreiber, M.; Leike, K.; Martin, D. E.; Cramer, P.: The Spt5 C-terminal region recruits yeast 3= RNA cleavage factor I. Molecular and Cellular Biology 32 (7), S. 1321 - 1331 (2012)

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166.

Zeitschriftenartikel

Schwalb, B.; Schulz, D.; Sun, M.; Zacher, B.; Dümcke, S.; Martin, D. E.; Cramer, P.; Tresch, A.: Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA). Bioinformatics 28 (6), S. 884 - 885 (2012)

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167.

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Cheung, A. C. M.; Sainsbury, S.; Cramer, P.: Structural basis of initial RNA polymerase II transcription. EMBO Journal 30 (23), S. 4755 - 4763 (2011)

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168.

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Seizl, M.; Hartmann, H.; Hoeg, F.; Kurth, F.; Martin, D. E.; Söding, J.; Cramer, P.: A conserved GA element in TATA-less RNA polymerase II promoters. PLoS One 6 (11), e27595 (2011)

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169.

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Ringel, R.; Sologub, M.; Morozov, Y. I.; Litonin, D.; Cramer, P.; Temiakov, D.: Structure of human mitochondrial RNA polymerase. Nature 478 (7368), S. 269 - 273 (2011)

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170.

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Blattner, C.; Jennebach, S.; Herzog, F.; Mayer, A.; Cheung, A. C. M.; Witte, G.; Lorenzen, K.; Hopfner, K.-P.; Heck, A. J. R.; Aebersold, R. et al.; Cramer, P.: Molecular basis of Rrn3-regulated RNA polymerase I initiation and cell growth. Genes and Development 25 (19), S. 2093 - 2105 (2011)

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171.

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Geiger, S. R.; Böttcher, T.; Sieber, S. A.; Cramer, P.: A conformational switch underlies ClpP protease function. Angewandte Chemie International Edition 50 (25), S. 5749 - 5752 (2011)

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172.

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Czeko, E.; Seizl, M.; Augsberger, C.; Mielke, T.; Cramer, P.: Iwr1 directs RNA polymerase II nuclear import. Molecular cell 42 (2), S. 261 - 266 (2011)

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173.

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Müller, M.; Heym, R. G.; Mayer, A.; Kramer, K.; Schmid, M.; Cramer, P.; Urlaub, H.; Jansen, R. P.; Niessing, D.: A cytoplasmic complex mediates specific mRNA recognition and localization in yeast. PLoS Biology 9 (4), e1000611 (2011)

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174.

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Seizl, M.; Larivière, L.; Pfaffeneder, T.; Wenzeck, L.; Cramer, P.: Mediator head subcomplex Med11/22 contains a common helix bundle building block with a specific function in transcription initiation complex stabilization. Nucleic Acids Research 39 (14), S. 6291 - 6304 (2011)

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175.

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Vojnic, E.; Mourão, A.; Seizl, M.; Simon, B.; Wenzeck, L.; Larivière, L.; Baumli, S.; Baumgart, K.; Meisterernst, M.; Sattler, M. et al.; Cramer, P.: Structure and VP16 binding of the Mediator Med25 activator interaction domain. Nature Structural and Molecular Biology 18 (4), S. 404 - 409 (2011)

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176.

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Ruan, W.; Lehmann, E.; Thomm, M.; Kostrewa, D.; Cramer, P.: Evolution of two modes of intrinsic RNA polymerase transcript cleavage. Journal of Biological Chemistry 286 (21), S. 18701 - 18707 (2011)

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177.

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Cheung, A. C. M.; Cramer, P.: Structural basis of RNA polymerase II backtracking, arrest and reactivation. Nature 471 (7337), S. 249 - 253 (2011)

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178.

Zeitschriftenartikel

Martinez‐Rucobo, F. W.; Sainsbury, S.; Cheung, A. C. M.; Cramer, P.: Architecture of the RNA polymerase–Spt4/5 complex and basis of universal transcription processivity. EMBO Journal 30 (7), S. 1302 - 1310 (2011)

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179.

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Miller, C.; Schwalb, B.; Maier, K.; Schulz, D.; Dümcke, S.; Zacher, B.; Mayer, A.; Sydow, J.; Marcinowski, L.; Dölken, L. et al.; Martin, D. E.; Tresch, A.; Cramer, P.: Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast. Molecular Systems Biology 7, 458 (2011)

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180.

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Clausing, E.; Mayer, A.; Chanarat, S.; Müller, B.; Germann, S. M.; Cramer, P.; Lisby, M.; Strässer, K.: The transcription elongation factor Bur1-Bur2 interacts with replication protein A and maintains genome stability during replication stress. Journal of Biological Chemistry 285 (53), S. 41665 - 41674 (2010)

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181.

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Sun, M.; Larivière, L.; Dengl, S.; Mayer, A.; Cramer, P.: A tandem SH2 domain in transcription elongation factor Spt6 binds the phosphorylated RNA polymerase II C-terminal repeat domain (CTD). Journal of Biological Chemistry 285 (53), S. 41597 - 41603 (2010)

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182.

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Beck, K.; Vannini, A.; Cramer, P.; Lipps, G.: The archaeo-eukaryotic primase of plasmid pRN1 requires a helix bundle domain for faithful primer synthesis. Nucleic Acids Research 38 (19), S. 6707 - 6718 (2010)

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183.

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Vannini, A.; Ringel, R.; Kusser, A. G.; Berninghausen, O.; Kassavetis, G. A.; Cramer, P.: Molecular basis of RNA polymerase III transcription repression by Maf1. Cell 143 (1), S. 59 - 70 (2010)

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184.

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Mayer, A.; Lidschreiber, M.; Siebert, M.; Leike, K.; Söding, J.; Cramer, P.: Uniform transitions of the general RNA polymerase II transcription complex. Nature Structural and Molecular Biology 17 (10), S. 1272 - 1278 (2010)

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185.

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Geiger, S. R.; Lorenzen, K.; Schreieck, A.; Hanecker, P.; Kostrewa, D.; Heck, A. J. R.; Cramer, P.: RNA polymerase I contains a TFIIF-related DNA-binding subcomplex. Molecular Cell 39 (4), S. 583 - 594 (2010)

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186.

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Cramer, P.: Towards molecular systems biology of gene transcription and regulation. Biological Chemistry 391 (7), S. 731 - 735 (2010)

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187.

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Hirtreiter, A.; Damsma, G. E.; Cheung, A. C. M.; Klose, D.; Grohmann, D.; Vojnic, E.; Martin, A. C. R.; Cramer, P.; Werner, F.: Spt4/5 stimulates transcription elongation through the RNA polymerase clamp coiled-coil motif. Nucleic Acids Research 38 (12), S. 4040 - 4051 (2010)

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Chen, Z. A.; Jawhari, A.; Fischer, L.; Buchen, C.; Tahir, S.; Kamenski, T.; Rasmussen, M.; Lariviere, L.; Bukowski‐Wills, J.‐.; Nilges, M. et al.; Cramer, P.; Rappsilber, J.: Architecture of the RNA polymerase II–TFIIF complex revealed by cross‐linking and mass spectrometry. EMBO Journal 29 (4), S. 717 - 726 (2010)

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Koschubs, T.; Lorenzen, K.; Baumli, S.; Sandström, S.; Heck, A. J. R.; Cramer, P.: Preparation and topology of the Mediator middle module. Nucleic Acids Research 38 (10), S. 3186 - 3195 (2010)

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190.

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Sydow, J.F.; Kostrewa, D.; Martin, D.; Cramer, P.: 10 Jahre RNA-Polymerase-Struktur – von Transkription zu Genregulation. BIOspektrum 16 (1), S. 24 - 27 (2010)

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Kostrewa, D.; Zeller, M. E.; Armache, K.-J.; Seizl, M.; Leike, K.; Thomm, M.; Cramer, P.: RNA polymerase II–TFIIB structure and mechanism of transcription initiation. Nature 462 (7271), S. 323 - 330 (2009)

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Sydow, J. F.; Cramer, P.: RNA polymerase fidelity and transcriptional proofreading. Current Opinion in Structural Biology 19 (6), S. 732 - 739 (2009)

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193.

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Damsma, G. E.; Cramer, P.: Molecular basis of transcriptional mutagenesis at 8-Oxoguanine. Journal of Biological Chemistry 284 (46), S. 31658 - 31663 (2009)

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194.

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Dengl, S.; Cramer, P.: Torpedo nuclease Rat1 is insufficient to terminate RNA polymerase II in vitro. The Journal of Biological Chemistry 284 (32), S. 21270 - 21279 (2009)

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195.

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Andrecka, J.; Treutlein, B.; Arcusa, M. A. I.; Muschielok, A.; Lewis, R.; Cheung, A. C. M.; Cramer, P.; Michaelis, J.: Nano positioning system reveals the course of upstream and nontemplate DNA within the RNA polymerase II elongation complex. Nucleic Acids Research 37 (17), S. 5803 - 5809 (2009)

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196.

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Sydow, J. F.; Brueckner, F.; Cheung, A. C.M.; Damsma, G. E.; Dengl, S.; Lehmann, E.; Vassylyev, D.; Cramer, P.: Structural basis of transcription: Mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA. Molecular Cell 34 (6), S. 710 - 721 (2009)

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197.

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Brueckner, F.; Ortiz, J.; Cramer, P.: A movie of the RNA polymerase nucleotide addition cycle. Current Opinion in Structural Biology 19 (3), S. 294 - 299 (2009)

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198.

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Dengl, S.; Mayer, A.; Sun, M.; Cramer, P.: Structure and in vivo requirement of the yeast Spt6 SH2 domain. Journal of Molecular Biology 389 (1), S. 211 - 225 (2009)

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