Publikationen
Zeitschriftenartikel (33)
1.
Zeitschriftenartikel
7, 146 (2020)
Large database for the analysis and prediction of spliced and non-spliced peptide generation by proteasomes. Scientific Data 2.
Zeitschriftenartikel
50 (2), S. 270 - 283 (2020)
ER-aminopeptidase 1 determines the processing and presentation of an immunotherapy-relevant melanoma epitope. European Journal of Immunology 3.
Zeitschriftenartikel
269, S. 146 - 158 (2019)
Eigenvector-based identification of bipartite subgraphs. Discrete Applied Mathematics 4.
Zeitschriftenartikel
47 (17), S. 8961 - 8974 (2019)
Reconstructing complex lineage trees from scRNA-seq data using MERLoT. Nucleic Acids Research 5.
Zeitschriftenartikel
294, S. 7740 - 7754 (2019)
Proteolytic dynamics of human 20S thymoproteasome. Journal of Biological Chemistry 6.
Zeitschriftenartikel
8 (3), 262 (2019)
Untangling extracellular proteasome-osteopontin circuit dynamics in multiple sclerosis. Cells 7.
Zeitschriftenartikel
7 (1), S. 62 - 76 (2019)
Mapping the MHC class I spliced immunopeptidome of cancer cells. Cancer Immunology Research 8.
Zeitschriftenartikel
10, 2572 (2019)
An in silico-in vitro pipeline identifying an HLA-A*02:01+ KRAS G12V+ spliced epitope candidate for a broad tumor-immune response in cancer patients. Frontiers in Immunology 9.
Zeitschriftenartikel
52, S. 81 - 86 (2018)
Why do proteases mess up with antigen presentation by re-shuffling antigen sequences? Current Opinion in Immunology 10.
Zeitschriftenartikel
34 (7), S. 1249 - 1250 (2018)
PEITH(Θ) - perfecting experiments with information theory in python with GPU support. Bioinformatics 11.
Zeitschriftenartikel
38 (12), S. 904 - 915 (2017)
Post-translational peptide splicing and T cell responses. Trends in Immunology 12.
Zeitschriftenartikel
8, 1441 (2017)
An unexpected major role for proteasome-catalyzed peptide splicing in generation of T cell epitopes: Is there relevance for vaccine development? Frontiers in Immunology 13.
Zeitschriftenartikel
35 (11), S. 2292 - 2304 (2017)
Single cell phenotyping reveals heterogeneity among haematopoietic stem cells following infection. Stem Cells 14.
Zeitschriftenartikel
20 (5), S. 1242 - 1253 (2017)
Multi-level strategy for identifying proteasome-catalyzed spliced epitopes targeted by CD8+ T cells during bacterial infection. Cell Reports 15.
Zeitschriftenartikel
7, 43718 (2017)
Extracellular proteasome-osteopontin circuit regulates cell migration with implications in multiple sclerosis. Scientific Reports 16.
Zeitschriftenartikel
354 (6310), S. 354 - 358 (2016)
A large fraction of HLA class I ligands are proteasome-generated spliced peptides. Science 17.
Zeitschriftenartikel
26 (15), S. 1975 - 1989 (2016)
Systems analysis of the dynamic inflammatory response to tissue damage reveals spatiotemporal properties of the wound attractant gradient. Current Biology 18.
Zeitschriftenartikel
3 (1), S. 102 - 107 (2016)
Accurate reconstruction of cell and particle tracks from 3D live imaging data. Cell Systems 19.
Zeitschriftenartikel
46 (5), S. 1109 - 1118 (2016)
CD8(+) T cells of Listeria monocytogenes-infected mice recognize both linear and spliced proteasome products. European Journal of Immunology 20.
Zeitschriftenartikel
290 (51), S. 30417 - 30428 (2015)
The T210M substitution in the HLA-a*02:01 gp100 epitope strongly affects overall proteasomal cleavage site usage and antigen processing. Journal of Biological Chemistry 21.
Zeitschriftenartikel
12 (6), 066001 (2015)
Inference of random walk models to describe leukocyte migration. Physical Biology 22.
Zeitschriftenartikel
4, e07545 (2015)
Quantitative time-resolved analysis reveals intricate, differential regulation of standard- and immuno-proteasomes. eLife 23.
Zeitschriftenartikel
91 (4), 042115 (2015)
Goldstein-Kac telegraph processes with random speeds: Path probabilities, likelihoods, and reported Lévy flights. Physical Review E 24.
Zeitschriftenartikel
44 (12), S. 3508 - 3521 (2014)
Proteasome isoforms exhibit only quantitative differences in cleavage and epitope generation. European Journal of Immunology 25.
Zeitschriftenartikel
35, S. 98 - 108 (2014)
Information theory and signal transduction systems: From molecular information processing to network inference. Seminars in Cell and Developmental Biology 26.
Zeitschriftenartikel
4 (2), S. 585 - 599 (2014)
Modelling proteasome and proteasome regulator activities. Biomolecules 27.
Zeitschriftenartikel
9, S. 439 - 456 (2014)
A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation. Nature Protocols 28.
Zeitschriftenartikel
9 (1), e1002888 (2013)
Maximizing the information content of experiments in systems biology. PLoS Computational Biology 29.
Zeitschriftenartikel
91 (1), S. 60 - 69 (2013)
P38 and JNK have opposing effects on persistence of in vivo leukocyte migration in zebrafish. Immunology and Cell Biology 30.
Zeitschriftenartikel
4 (3), S. 335 - 345 (2012)
Calibrating spatio-temporal models of leukocyte dynamics against in vivo live-imaging data using approximate Bayesian computation. Integrative Biology 31.
Zeitschriftenartikel
27 (6), S. 874 - 876 (2011)
GPU accelerated biochemical network simulation. Bioinformatics 32.
Zeitschriftenartikel
26 (14), S. 1797 - 1799 (2010)
ABC-SysBio-approximate Bayesian computation in Python with GPU support. Bioinformatics 33.
Zeitschriftenartikel
6 (6), e1000830 (2010)
The 20S proteasome splicing activity discovered by SpliceMet. PLoS Computational Biology Buchkapitel (1)
34.
Buchkapitel
ABC in systems biology. In: Handbook of approximate bayesian computation (Hg. Sisson, S. A.; Fan, Y.; Beaumont, M. A.) (2019)