Publikationen

Zeitschriftenartikel (31)

1.
Zeitschriftenartikel
Basquin, C.; Ershov, D.; Gaudin, N.; Vu, h. T. K.; Louis, B.; Papon, J. F.; Orfila, A. M.; Mansour, S.; Rink, J. C.; Azimzadeh, J.: Emergence of a bilaterally symmetric pattern from chiral components in the planarian epidermis. Developmental Cell 51 (4), S. 516 - 525 (2019)
2.
Zeitschriftenartikel
Vu, H. T. K.; Mansour, S.; Kücken, M.; Blasse, C.; Basquin, C.; Azimzadeh, J.; Myers, E. W.; Brusch, L.; Rink, J. C.: Dynamic polarization of the multiciliated planarian epidermis between body plan landmarks. Developmental Cell 51 (4), S. 526 - 542 (2019)
3.
Zeitschriftenartikel
Leria, L.; Vila Farre, M.; Solà, E.; Riutort, M.: Outstanding intraindividual genetic diversity in fissiparous planarians (Dugesia, Platyhelminthes) with facultative sex. BMC Evolutionary Biology 19, 130 (2019)
4.
Zeitschriftenartikel
Rozanski, A.; Moon, H.; Brandl, H.; Martin-Duran, J. M.; Grohme, M. A.; Hüttner, K.; Bartscherer, K.; Henry, I.; Rink, J. C.: PlanMine 3.0improvements to a mineable resource of flatworm biology and biodiversity. Nucleic Acids Research 47 (D1), S. D812 - D820 (2019)
5.
Zeitschriftenartikel
Thommen, A.; Werner, S.; Frank, O.; Philipp, J.; Knittelfelder, O.; Quek, Y.; Fahmy, K.; Shevchenko, A.; Friedrich, B. M.; Jülicher, F. et al.; Rink, J. C.: Body size-dependent energy storage causes Kleiber's law scaling of the metabolic rate in planarians. eLife 8, e38187 (2019)
6.
Zeitschriftenartikel
Ivankovic, M.; Haneckova, R.; Thommen, A.; Grohme, M. A.; Vila-Farre, M.; Werner, S.; Rink, J. C.: Mode systems for regeneration: Planarians. Development 146 (17), dev167684 (2019)
7.
Zeitschriftenartikel
Simion, P.; Belkhir, K.; Francois, C.; Veyssier, J.; Rink, J. C.; Manuel, M.; Philippe, H.; Telford, M. J.: A software tool 'CroCo' detects pervasive cross-species contamination in next generation sequencing data. BMC Biology 16, 28 (2018)
8.
Zeitschriftenartikel
Grohme, M. A.; Schloissnig, S.; Rozanski, A.; Pippel, M.; Young, G. R.; Winkler, S.; Brandl, H.; Dahl, A.; Powell, S.; Hiller, M. et al.; Myers, E.; Rink, J. C.: The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms. Nature 554 (7690), S. 56 - 61 (2018)
9.
Zeitschriftenartikel
Sluys, R.; Vila Farre, M.; Rink, J. C.; Rasko, J. E. J.: An intriguing, new planarian species from Tasmania, with a discussion on protandry in triclad flatworms (Platyhelminthes, Tricladida). Acta Zoologica 99 (4), S. 404 - 414 (2018)
10.
Zeitschriftenartikel
Weigert, M.; Schmidt, U.; Boothe, T.; Müller, A.; Dibrov, A.; Jain, A.; Wilhelm, B.; Schmidt, D.; Broaddus, C.; Culley, S. et al.; Rocha-Martins, M.; Segovia-Miranda, F.; Norden, C.; Henriques, R.; Zerial, M.; Solimena, M.; Rink, J. C.; Tomancak, P.; Royer, L.; Jug, F.; Myers, E. W.: Content-aware image restoration: Pushing the limits of fluorescence microscopy. Nature Methods 15 (12), S. 1090 - 1097 (2018)
11.
Zeitschriftenartikel
Boothe, T.; Hilbert, L.; Heide, M.; Berninger, L.; Huttner, W. B.; Zaburdaev, V.; Vastenhouw, N. L.; Myers, E. W.; Drechsel, D. N.; Rink, J. C.: A tunable refractive index matching medium for live imaging cells, tissues and model organisms. eLife 6, e27240 (2017)
12.
Zeitschriftenartikel
Stückemann, T.; Cleland, J. P.; Werner, S.; Vu, H. T. K.; Bayersdorf, R.; Liu, S. Y.; Friedrich, B.; Jülicher, F.; Rink, J. C.: Antagonistic self-organizing patterning systems control maintenance and regeneration of the anteroposterior axis in planarians. Developmental Cell 40 (3), S. 248 - 263 (2017)
13.
Zeitschriftenartikel
Werner, S.; Vu, H. T. K.; Rink, J. C.: Self-organization in development, regeneration and organoids. Current Opinion in Cell Biology 44, S. 102 - 109 (2017)
14.
Zeitschriftenartikel
Hoffmann, K. B.; Voss-Böhme, A.; Rink, J. C.; Brusch, L.: A dynamically diluted alignment model reveals the impact of cell turnover on the plasticity of tissue polarity patterns. Journal of the Royal Society Interface 14 (135), 20170466 (2017)
15.
Zeitschriftenartikel
Brandl, H.; Moon, H.; Vila Farre, M.; Liu, S. Y.; Henry, I.; Rink, J. C.: PlanMine - A mineable resource of planarian biology and biodiversity. Nucleic Acids Research 44 (D1), S. D764 - D773 (2016)
16.
Zeitschriftenartikel
Levin, M.; Anavy, L.; Cole, A. G.; Winter, E.; Mostov, N.; Khair, S.; Senderovich, N.; Kovalev, E.; Silver, D. H.; Feder, M. et al.; Fernandez-Valverde, S. L.; Nakanishi, N.; Simmons, D.; Simakov, O.; Larsson, T.; Liu, S. Y.; Jerafi-Vider, A.; Yaniv, K.; Ryan, J. F.; Martindale, M. Q.; Rink, J. C.; Arendt, D.; Degnan, S. M.; Degnan, B. M.; Hashimshony, T.; Yanai, I.: The mid-developmental transition and the evolution of animal body plans. Nature 531 (7596), S. 637 - 641 (2016)
17.
Zeitschriftenartikel
Vu, H. T. K.; Rink, J. C.; McKinney, S. A.; McClain, M.; Lakshmanaperumal, N.; Alexander, R.; Alvarado, A. S.: Stem cells and fluid flow drive cyst formation in an invertebrate excretory organ. eLife 4, e07405 (2015)
18.
Zeitschriftenartikel
Werner, S.; Stückemann, T.; Amigo, M. B.; Rink, J. C.; Jülicher, F.; Friedrich, B. M.: Scaling and regeneration of self-organized patterns. Physical Review Letters 114 (13), 138101 (2015)
19.
Zeitschriftenartikel
Werner, S.; Rink, J. C.; Riedel-Kruse, I. H.; Friedrich, B. M.: Shape mode analysis exposes movement patterns in biology: Flagella and flatworms as case studies. PLoS One 9 (11), e113083 (2014)
20.
Zeitschriftenartikel
Liu, S. Y.; Selck, C.; Friedrich, B.; Lutz, R.; Vila Farre, M.; Dahl, A.; Brandl, H.; Lakshmanaperumal, N.; Henry, I.; Rink, J. C.: Reactivating head regrowth in a regeneration-deficient planarian species. Nature 500 (7460), S. 81 - 84 (2013)
21.
Zeitschriftenartikel
Rink, J. C.: Stem cell systems and regeneration in planaria. Development Genes and Evolution 223 (1-2), S. 67 - 84 (2013)
22.
Zeitschriftenartikel
Vij, S.; Rink, J. C.; Ho, H. K.; Babu, D.; Eitel, M.; Narasimhan, V.; Tiku, V.; Westbrook, J.; Schierwater, B.; Roy, S.: Evolutionarily ancient association of the FoxJ1 transcription factor with the motile ciliogenic program. PLoS Genetics 8 (11), e1003019 (2012)
23.
Zeitschriftenartikel
Rink, J. C.; Vu, H. T. K.; Alvarado, A. S.: The maintenance and regeneration of the planarian excretory system are regulated by EGFR signaling. Development 138 (17), S. 3769 - 3780 (2011)
24.
Zeitschriftenartikel
Collinet, C.; Stöter, M.; Bradshaw, C. R.; Samusik, N.; Rink, J. C.; Kenski, D.; Habermann, B.; Buchholz, F.; Henschel, R.; Mueller, M. S. et al.; Nagel, W. E.; Fava, E.; Kalaidzidis, Y.; Zerial, M.: Systems survey of endocytosis by multiparametric image analysis. Nature 464 (7286), S. 243 - 249 (2010)
25.
Zeitschriftenartikel
Pearson, B. J.; Eisenhoffer, G. T.; Gurley, K. A.; Rink, J. C.; Miller, D. E.; Alvarado, A. S.: Formaldehyde-based whole-mount in situ hybridization method for planarians. Developmental Dynamics 238 (2), S. 443 - 450 (2009)
26.
Zeitschriftenartikel
Rink, J. C.; Gurley, K. A.; Elliott, S. A.; Alvarado, A. S.: Planarian Hh signaling regulates regeneration polarity and links Hh pathway evolution to cilia. Science 326 (5958), S. 1406 - 1410 (2009)
27.
Zeitschriftenartikel
Gurley, K. A.; Rink, J. C.; Alvarado, A. S.: Beta-catenin defines head versus tail identity during planarian regeneration and homeostasis. Science 319 (5861), S. 323 - 327 (2008)
28.
Zeitschriftenartikel
Del Conte-Zerial, P.; Brusch, L.; Rink, J. C.; Collinet, C.; Kalaidzidis, Y.; Zerial, M.; Deutsch, A.: Membrane identity and GTPase cascades regulated by toggle and cut-out switches. Molecular Systems Biology 4, 206 (2008)
29.
Zeitschriftenartikel
Rink, J. C.; Ghigo, E.; Kalaidzidis, Y.; Zerial, M.: Rab conversion as a mechanism of progression from early to late endosomes. Cell 122 (5), S. 735 - 749 (2005)
30.
Zeitschriftenartikel
Johannes, E.; Collings, D. A.; Rink, J. C.; Strömgren Allen, N.: Cytoplasmic pH dynamics in maize pulvinal cells induced induced by gravity vector changes. Plant Physiology 127 (1), S. 119 - 130 (2001)
31.
Zeitschriftenartikel
Collings, D. A.; Carter, C. N.; Rink, J. C.; Scott, A. C.; Wyatt, S. E.; Strömgren Allen, N.: Plant nuclei can contain extensive grooves and invaginations. The Plant Cell 12 (12), S. 2425 - 2439 (2000)

Buch (1)

32.
Buch
Rink, J. C. (Hg.): Planarian Regeneration: Methods and Protocols. (2018)

Buchkapitel (4)

33.
Buchkapitel
Grohme, M. A.; Vila Farre, M.; Rink, J. C.: Small- and large-scale high molecular weight genomic DNA extraction from planarians. In: Planarian Regeneration: Methods and Protocols (Hg. Rink, J. C.). Humana Press, Totowa, USA (2018)
34.
Buchkapitel
Liu, S. Y.; Rink, J. C.: Total RNA isolation from planarian tissues. In: Planarian Regeneration: Methods and Protocols (Hg. Rink, J. C.). Humana Press, Totowa, USA (2018)
35.
Buchkapitel
Rink, J. C.: Stem cells, patterning and regeneration in planarians: Self-organization at the organismal scale. In: Planarian Regeneration: Methods and Protocols (Hg. Rink, J. C.). Humana Press, Totowa, USA (2018)
36.
Buchkapitel
Vila Farre, M.; Rink, J. C.: The ecology of freshwater planarians. In: Planarian Regeneration: Methods and Protocols (Hg. Rink, J. C.). Humana Press, Totowa, USA (2018)
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