Publikationen

Zeitschriftenartikel (117)

  1. MPG.PuRe
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    Rodnina, M. V.; Korniy, N.; Klimova, M.; Karki, P.; Peng, B. Z.; Senyushkina, T.; Belardinelli, R.; Maracci, C.; Wohlgemuth, I.; Samatova, E. N. et al.; Peske, F.: Translational recoding: Canonical translation mechanisms reinterpreted. Nucleic Acids Research (2019)
  2. MPG.PuRe
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    Korniy, N.; Samatova, E. N.; Anokhina, M. M.; Peske, F.; Rodnina, M. V.: Mechanisms and biomedical implications of –1 programmed ribosome frameshifting on viral and bacterial mRNAs. FEBS Letters 593 (13), S. 1468 - 1482 (2019)
  3. MPG.PuRe
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    Ranjan, N.; Leidel, S. A.: The epitranscriptome in translation regulation: mRNA and tRNA modifications as the two sides of the same coin? FEBS Letters 593 (13), S. 1483 - 1493 (2019)
  4. MPG.PuRe
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    Klimova, M.; Senyushkina, T.; Samatova, E. N.; Peng, B. Z.; Pearson, M.; Peske, F.; Rodnina, M. V.: EF-G-induced ribosome sliding along the noncoding mRNA. Science Advances 5 (6) (2019)
  5. MPG.PuRe
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    Korniy, N.; Goyal, A.; Hoffmann, M.; Samatova, E. N.; Peske, F.; Pöhlmann, S.; Rodnina, M. V.: Modulation of HIV-1 Gag/Gag-Pol frameshifting by tRNA abundance. Nucleic Acids Research 47 (10), S. 5210 - 5222 (2019)
  6. MPG.PuRe
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    Beissel , C.; Neumann, B.; Uhse, S.; Hampe , I.; Karki, P.; Krebber, H.: Translation termination depends on the sequential ribosomal entry of eRF1 and eRF3. Nucleic Acids Research 47 (9), S. 4798 - 4813 (2019)
  7. MPG.PuRe
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    Garofalo, R.; Wohlgemuth, I.; Pearson, M.; Lenz, C.; Urlaub, H.; Rodnina, M. V.: Broad range of missense error frequencies in cellular proteins. Nucleic Acids Research 47 (6), S. 2932 - 2945 (2019)
  8. MPG.PuRe
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    Girodat, D.; Mercier, E.; Gzyl, K. E.; Wieden, H. J.: Elongation factor Tu's nucleotide binding is governed by a thermodynamic landscape unique among bacterial translation factors. Journal of the American Chemical Society 141 (26), S. 10236 - 10246 (2019)
  9. MPG.PuRe
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    Haase, N.; Holtkamp, W.; Lipowsky, R.; Rodnina, M. V.; Rudorf, S.: Decomposition of time-dependent fluorescence signals reveals codon-specific kinetics of protein synthesis. Nucleic Acids Research 46 (22), e130 (2018)
  10. MPG.PuRe
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    Matsumoto, S.; Calsikan, N.; Rodnina, M. V.; Murata, A.; Nakatani, K.: Small synthetic molecule-stabilized RNA pseudoknot as an activator for -1 ribosomal frameshifting. Nucleic Acids Research 46 (16), S. 8079 - 8089 (2018)
  11. MPG.PuRe
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    Zinoviev, A.; Goyal, A.; Jindal, S.; LaCava, J.; Komar, A. A.; Rodnina, M. V.; Hellen, C. U. T.; Pestova, T. V.: Functions of unconventional mammalian translational GTPases GTPBP1 and GTPBP2. Genes and Development 32 (17-18), S. 1226 - 1241 (2018)
  12. MPG.PuRe
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    Graf, M.; Huter, P.; Maracci, C.; Peterek, M.; Rodnina, M. V.; Wilson, D. N.: Visualization of translation termination intermediates trapped by the Apidaecin 137 peptide during RF3-mediated recycling of RF1. Nature Communications 9 (2018)
  13. MPG.PuRe
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    Draycheva, A.; Lee, S.; Wintermeyer, W.: Cotranslational protein targeting to the membrane: Nascent-chain transfer in a quaternary complex formed at the translocon. Scientific Reports 8 (1) (2018)
  14. MPG.PuRe
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    Mercier, E.; Rodnina, M. V.: Co-translational folding trajectory of the HemK helical domain. Biochemistry 57 (25), S. 3460 - 3464 (2018)
  15. MPG.PuRe
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    Adio, S.; Sharma, H.; Senyushkina, T.; Karki, P.; Maracci, C.; Wohlgemuth, I.; Holtkamp, W.; Peske, F.; Rodnina, M. V.: Dynamics of ribosomes and release factors during translation termination in E-coli. eLife 7 (2018)
  16. MPG.PuRe
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    Andreeva, I.; Belardinelli, R.; Rodnina, M. V.: Translation initiation in bacterial polysomes through ribosome loading on a standby site on a highly translated mRNA. Proceedings of the National Academy of Sciences of the United States of America 115 (17), S. 4411 - 4416 (2018)
  17. MPG.PuRe
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    Rodnina, M. V.: Translation in prokaryotes. Cold Spring Harbor Perspectives in Biology 10 (9) (2018)
  18. MPG.PuRe
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    Blanchet, S.; Cornu, D.; Hatin, I.; Grosjean, H.; Bertin, P.; Namy, O.: Deciphering the reading of the genetic code by near-cognate tRNA. Proceedings of the National Academy of Sciences of the United States of America 115 (12) (2018)
  19. MPG.PuRe
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    Mercier, E.; Holtkamp, W.; Rodnina, M. V.; Wintermeyer, W.: Signal recognition particle binds to translating ribosomes before emergence of a signal anchor sequence. Nucleic Acids Research 45 (20), S. 11858 - 11866 (2017)
  20. MPG.PuRe
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    Huter, P.; Arenz, S.; Bock, L. V.; Graf, M.; Frister, J. O.; Heuer, A.; Peil, L.; Starosta, A. L.; Wohlgemuth, I.; Peske, F. et al.; Nováček, J.; Berninghausen, O.; Grubmüller, H.; Tenson, T.; Beckmann, R.; Rodnina, M. V.; Vaiana, A. C.; Wilson, D. N.: Structural basis for polyproline-mediated ribosome stalling and rescue by the translation elongation factor EF-P. Molecular Cell 68 (3), S. 515 - 527 (2017)
  21. MPG.PuRe
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    Goyal, A.; Belardinelli, R.; Rodnina, M. V.: Non-canonical binding site for bacterial initiation factor 3 on the large ribosomal subunit. Cell Reports 20 (13) (2017)
  22. MPG.PuRe
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    Belardinelli, R.; Rodnina, M. V.: Effect of fusidic acid on the kinetics of molecular motions during EF-G-induced translocation on the ribosome. Scientific Reports 7 (2017)
  23. MPG.PuRe
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    Florin, T.; Maracci, C.; Graf, M.; Karki, P.; Klepacki, D.; Berninghausen, O.; Beckmann, R.; Vazquez-Laslop, N.; Wilson, D. N.; Rodnina, M. V. et al.; Mankin, A. S.: An antimicrobial peptide that inhibits translation by trapping release factor trap. Nature Structural and Molecular Biology 24 (9), S. 752 - 757 (2017)
  24. MPG.PuRe
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    Agirrezabala, X.; Samatova, E. N.; Klimova, M.; Zamora, M.; Gil-Carton, D.; Rodnina, M. V.; Valle, M.: Ribosome rearrangements at the onset of translational bypassing. Science Advances 3 (6) (2017)
  25. MPG.PuRe
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    Caliskan, N.; Wohlgemuth, I.; Korniy, N.; Pearson, M.; Peske, F.; Rodnina, M. V.: Conditional switch between frameshifting regimes upon translation of dnaX mRNA. Molecular Cell 66 (4) (2017)
  26. MPG.PuRe
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    Ranjan, A.; Mercier, E.; Bhatt, A.; Wintermeyer, W.: Signal recognition particle prevents N-terminal processing of bacterial membrane proteins. Nature Communications 8 (2017)
  27. MPG.PuRe
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    Ranjan, N.; Rodnina, M. V.: Thio-modification of tRNA at the wobble position as regulator of the kinetics of decoding and translocation on the ribosome. Journal of the American Chemical Society 139 (16), S. 5857 - 5864 (2017)
  28. MPG.PuRe
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    Rodnina, M. V.; Fischer, N.; Maracci, C.; Stark, H.: Ribosome dynamics during decoding. Philosophical Transactions of the Royal Society B 372 (1716), 20160182 (2017)
  29. MPG.PuRe
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    Thommen, M.; Holtkamp, W.; Rodnina, M. V.: Co-translational protein folding: Progress and methods. Current Opinion in Structural Biology 42, S. 83 - 89 (2017)
  30. MPG.PuRe
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    Fischer, N.; Neumann, P.; Bock, l. V.; Maracci, C.; Wang, Z.; Paleskava, A.; Konevega, A. L.; Schröder, G. F.; Grubmüller, H.; Ficner, R. et al.; Rodnina, M. V.; Stark, H.: The pathway to GTPase activation of elongation factor SelB on the ribosome. Nature 540 (7631), S. 80 - 85 (2016)
  31. MPG.PuRe
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    Haag, S.; Sloan, K. E.; Ranjan, N.; Warda, A. S.; Kretschmer, J.; Blessing, C.; Hübner, B.; Seikowski, J.; Dennerlein, S.; Rehling, P. et al.; Rodnina, M. V.; Höbartner, C.; Bohnsack, M. T.: NSUN3 and ABH1 modify the wobble position of mt-tRNAMet to expand codon recognition in mitochondrial translation. The EMBO Journal 35 (19), S. 2104 - 2119 (2016)
  32. MPG.PuRe
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    Draycheva, A.; Bornemann, T.; Ryazanov, S.; Lakomek, N. A.; Wintermeyer, W.: The bacterial SRP receptor, FtsY, is activated on binding to the translocon. Molecular Microbiology 102 (1), S. 152 - 167 (2016)
  33. MPG.PuRe
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    Sharma, H.; Adio, S.; Senyushkina, T.; Belardinelli, R.; Peske, F.; Rodnina, M. V.: Kinetics of spontaneous and EF-G-accelerated rotation of ribosomal subunits. Cell Reports 16 (8), S. 2187 - 2196 (2016)
  34. MPG.PuRe
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    Lakomek, N. A.; Draycheva, A.; Bornemann, T.; Wintermeyer, W.: Electrostatics and intrinsic disorder drive translocon binding of the SRP receptor FtsY. Angewandte Chemie International Edition 55 (33), S. 9544 - 9547 (2016)
  35. MPG.PuRe
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    Maracci, C.; Rodnina, M. V.: Translational GTPases. Biopolymers 105 (8), S. 463 - 475 (2016)
  36. MPG.PuRe
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    Rodnina, M. V.: The ribosome in action: Tuning of translational efficiency and protein folding. Protein Science 25 (8), S. 1390 - 1406 (2016)
  37. MPG.PuRe
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    Katoh, T.; Wohlgemuth, I.; Nagano, M.; Rodnina, M. V.; Suga, H.: Essential structural elements in tRNAPro for EF-P-mediated alleviation of translation stalling. Nature Communications 7 (2016)
  38. MPG.PuRe
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    Rodnina, M. V.; Wintermeyer, W.: Protein elongation, co-translational folding and targeting. Journal of Molecular Biology 428 (10, P. B), S. 2165 - 2185 (2016)
  39. MPG.PuRe
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    Fabbretti, A.; Schedlbauer, A.; Brandi, L.; Kaminishi, T.; Giuliodori, A. M.; Garofalo, R.; Ochoa-Lizarralde, B.; Takemoto, C.; Yokoyama, S.; Connell, S. R. et al.; Gualerzi, C. O.; Fucini, P.: Inhibition of translation initiation complex formation by GE81112 unravels a 16S rRNA structural switch involved in P-site decoding. Proceedings of the National Academy of Sciences of the United States of America 113 (16) (2016)
  40. MPG.PuRe
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    Belardinelli, R.; Sharma, H.; Caliskan, N.; da Cunha, C. E. L.; Peske, F.; Wintermeyer, W.; Rodnina, M. V.: Choreography of molecular movements during ribosome progression along mRNA. Nature Structural and Molecular Biology 23 (4), S. 342 - 348 (2016)
  41. MPG.PuRe
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    Buhr, F.; Jha, S.; Thommen, M.; Mittelstät, J.; Kutz, F.; Schwalbe, H.; Rodnina, M. V.; Komar, A. A.: Synonymous codons direct cotranslational folding toward different protein conformations. Molecular Cell 61 (3), S. 341 - 351 (2016)
  42. MPG.PuRe
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    Ranjan, N.; Rodnina, M. V.: tRNA wobble modifications and protein homeostasis. Translation 4 (1) (2016)
  43. MPG.PuRe
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    Belardinelli, R.; Sharma, H.; Peske, F.; Wintermeyer, W.; Rodnina, M. V.: Translocation as continuous movement through the ribosome. RNA Biology 13 (12), S. 1197 - 1203 (2016)
  44. MPG.PuRe
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    Goyal, A.; Belardinelli, R.; Maracci, C.; Milon, P.; Rodnina, M. V.: Directional transition from initiation to elongation in bacterial translation. Nucleic Acids Research 43 (22), S. 10700 - 10712 (2015)
  45. MPG.PuRe
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    Druzhinin, S. I.; Galievsky, V. A.; Demeter, A.; Kovalenko, S. A.; Senyushkina, T.; Dubbaka, S. R.; Knoche, P.; Mayer, P.; Grosse, C.; Stalke, D. et al.; Zachariasse, K. A.: Two-state intramolecular charge transfer (ICT) with 3,5-dimethyl-4(dimethylamino)benzonitrile (MMD) and its meta-isomer mMMD. Ground state amino twist not essential for ICT. Journal of Physical Chemistry A 119 (49), S. 11820 - 11836 (2015)
  46. MPG.PuRe
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    Maracci, C.; Wohlgemuth, I.; Rodnina, M. V.: Activities of the peptidyl transferase center of ribosomes lacking protein L27. RNA 21 (12), S. 2047 - 2052 (2015)
  47. MPG.PuRe
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    Holtkamp, W.; Kokic, G.; Jäger, M.; Mittelstät, J.; Komar, A.; Rodnina, M. V.: Cotranslational protein folding on the ribosome monitored in real time. Science 250 (6264) (2015)
  48. MPG.PuRe
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    Dörfel, L. K.; Wohlgemuth, I.; Kubyshkin, V.; Starosta, A. L.; Wilson, D. N.; Budisa, N.; Rodnina, M. V.: Entropic contribution of elongation factor P to proline positioning at the catalytic center of the ribosome. Journal of the American Chemical Society 137 (40), S. 12997 - 13006 (2015)
  49. MPG.PuRe
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    Kuhn, P.; Draycheva, A.; Vogt, A.; Petriman, N. A.; Sturm, L.; Drepper, F.; Warscheid, B.; Wintermeyer, W.; Koch, H. G.: Ribosome binding induces repositioning of the signal recognition particle receptor on the translocon. Journal of Cell Biology 211 (1) (2015)
  50. MPG.PuRe
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    Kotini, S. B.; Peske, F.; Rodnina, M. V.: Partitioning between recoding and termination at a stop codon-selenocysteine insertion sequence. Nucleic Acids Research 43 (13), S. 6426 - 6438 (2015)
  51. MPG.PuRe
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    Adio, S.; Senyushkina, T.; Peske, F.; Fischer, N.; Wintermeyer, W.; Rodnina, M. V.: Fluctuations between multiple EF-G-induced chimeric tRNA states during translocation on the ribosome. Nature Communications 6 (2015)
  52. MPG.PuRe
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    Byrne, R. T.; Jenkins, H. T.; Peters, D. T.; Whelan, F.; Stowell, J.; Aziz, N.; Kasatzky, P.; Rodnina, M. V.; Koonin, E. V.; Konevega, A. L. et al.; Antson, A. A.: Major reorientation of tRNA substrates defines specificity of dihydrouridine synthases. Proceedings of the National Academy of Sciences of the United States of America 112 (19), S. 6033 - 6037 (2015)
  53. MPG.PuRe
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    Caliskan, N.; Peske, F.; Rodnina, M. V.: Changed in translation: mRNA recoding by −1 programmed ribosomal frameshifting. Trends in Biochemical Sciences 40 (5), S. 265 - 274 (2015)
  54. MPG.PuRe
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    Fischer, N.; Neumann, P.; Konevega, A. L.; Bock, L. V.; Ficner, R.; Rodnina, M. V.; Stark, H.: Structure of the E. coli ribosome–EF-Tu complex at <3 Å resolution by Cs-corrected cryo-EM. Nature 520 (7548), S. 567 - 570 (2015)
  55. MPG.PuRe
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    Wohlgemuth, I.; Lenz, C.; Urlaub, H.: Studying macromolecular complex stoichiometries by peptide-based mass spectrometry. Proteomics 15 (5-6), S. 862 - 879 (2015)
  56. MPG.PuRe
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    Polikanov, Y. S.; Osterman, I. A.; Szal, T.; Tashlitsky, V. N.; Serebryakova, M. V.; Kusochek, P.; Bulkley, D.; Malanicheva, I. A.; Efimenko, T. A.; Efremenkova, O. V. et al.; Konevega, A. L.; Shaw, k.J.; Bogdanov, A. A.; Rodnina, M. V.; Dontsova, O. A.; Mankin, A. S.; Steitz, T. A.; Sergiev, P. V.: Amicoumacin a inhibits translation by stabilizing mRNA interaction with the ribosome. Molecular Cell 56 (4), S. 531 - 540 (2014)
  57. MPG.PuRe
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    Rudorf, S.; Thommen, M.; Rodnina, M. V.; Lipowsky, R.: Deducing the kinetics of protein synthesis in vivo from the transition rates measured in vitro. PLoS Computational Biology 10 (10) (2014)
  58. MPG.PuRe
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    Ge, Y.; Draycheva, A.; Bornemann, T.; Rodnina, M. V.; Wintermeyer, W.: Lateral opening of the bacterial translocon on ribosome binding and signal peptide insertion. Nature Communications 5 (2014)
  59. MPG.PuRe
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    Maracci, C.; Peske, F.; Dannies, E.; Pohl, C.; Rodnina, M. V.: Ribosome-induced tuning of GTP hydrolysis by a translational GTPase. Proceedings of the National Academy of Sciences of the United States of America 111 (40), S. 14418 - 14423 (2014)
  60. MPG.PuRe
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    Holtkamp, W.; Wintermeyer, W.; Rodnina, M. V.: Synchronous tRNA movements during translocation on the ribosome are orchestrated by elongation factor G and GTP hydrolysis. BioEssays 36 (10), S. 908 - 918 (2014)
  61. MPG.PuRe
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    Garreau de Loubresse, N.; Prokhorova, I.; Holtkamp, W.; Rodnina, M. V.; Yusupova , G.; Yusupov, M.: Structural basis for the inhibition of the eukaryotic ribosome. Nature 513 (7519), S. 517 - 522 (2014)
  62. MPG.PuRe
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    Samatova, E. N.; Konevega, A. L.; Wills, N. M.; Atkins, J. F.; Rodnina, M. V.: High-efficiency translational bypassing of non-coding nucleotides specified by mRNA structure and nascent peptide. Nature communications 5 (2014)
  63. MPG.PuRe
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    Caliskan, N.; Katunin, V. I.; Belardinelli, R.; Peske, F.; Rodnina, M. V.: Programmed –1 frameshifting by kinetic partitioning during impeded translocation. Cell 157 (7), S. 1619 - 1631 (2014)
  64. MPG.PuRe
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    Bornemann, T.; Holtkamp, W.; Wintermeyer, W.: Interplay between trigger factor and other protein biogenesis factors on the ribosome. Nature Communications 5 (2014)
  65. MPG.PuRe
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    Holtkamp, W.; da Cunha, C. E. L.; Peske, F.; Konevega, A. L.; Wintermeyer, W.; Rodnina, M. V.: GTP hydrolysis by EF‐G synchronizes tRNA movement on small and large ribosomal subunits. EMBO Journal 33 (9), S. 1073 - 1085 (2014)
  66. MPG.PuRe
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    Peske, F.; Kuhlenkötter, S.; Rodnina, M. V.; Wintermeyer, W.: Timing of GTP binding and hydrolysis by translation termination factor RF3. Nucleic Acids Research 42 (3), S. 1812 - 1820 (2014)
  67. MPG.PuRe
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    Bock, L. V.; Blau, C.; Schröder, G. F.; Davydov, I. I.; Fischer, N.; Stark, H.; Rodnina, M. V.; Vaiana, A. C.; Grubmüller, H.: Energy barriers and driving forces in tRNA translocation through the ribosome. Nature Structural and Molecular Biology 20 (12), S. 1390 - 1396 (2013)
  68. MPG.PuRe
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    Dörfel, L. K.; Rodnina, M. V.: Elongation factor P: Function and effects on bacterial fitness. Biopolymers 99 (11), S. 837 - 845 (2013)
  69. MPG.PuRe
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    Mittelstät, J.; Konevega, A. L.; Rodnina, M. V.: A kinetic safety gate controlling the delivery of unnatural amino acids to the ribosome. Journal of the American Chemical Society 135 (45) (2013)
  70. MPG.PuRe
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    Rodnina, M. V.: The ribosome as a versatile catalyst: Reactions at the peptidyl transferase center. Current Opinion in Structural Biology 23 (4), S. 595 - 602 (2013)
  71. MPG.PuRe
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    Rezgui, V. A. N.; Kshitiz, T.; Namit, R.; Konevega, A. L.; Mittelstät, J.; Rodnina, M. V.; Peter, M.; Pedrioli, P. G. A.: tRNA tKUUU, tQUUG, and tEUUC wobble position modifications fine-tune protein translation by promoting ribosome A-site binding. Proceedings of the National Academy of Sciences of the United States of America 110 (30), S. 12289 - 12294 (2013)
  72. MPG.PuRe
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    Rodnina, M. V.: Translocation in action. Science 340 (6140), S. 1534 - 1535 (2013)
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    da Cunha, C. E. L.; Belardinelli, R.; Peske, F.; Holtkamp, W.; Wintermeyer, W.; Rodnina, M. V.: Dual use of GTP hydrolysis by elongation factor G on the ribosome. Translation 1 (1), e24315 (2013)
  74. MPG.PuRe
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    Davydov, I.; Wohlgemuth, I.; Artamonova, I. I.; Urlaub, H.; Tonevitzky, A. G.; Rodnina, M. V.: Evolution of the protein stoichiometry in the L12 stalk of bacterial and organellar ribosomes. Nature Communications 4 (2013)
  75. MPG.PuRe
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    Doerfel, L. K.; Wohlgemuth, I.; Kothe, C.; Peske, F.; Urlaub, H.; Rodnina, M. V.: EF-P is essential for rapid synthesis of proteins containing consecutive proline residues. Science 339 (6115), S. 85 - 88 (2013)
  76. MPG.PuRe
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    Holtkamp, W.; Lee, S.; Bornemann, T.; Senyushkina, T.; Rodnina, M. V.; Wintermeyer, W.: Dynamic switch of the signal recognition particle from scanning to targeting. Nature Structural and Molecular Biology 19 (12), S. 1332 - 1337 (2012)
  77. MPG.PuRe
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    Milon, P.; Maracci, C.; Filonava, L.; Gualerzi, C. O.; Rodnina, M. V.: Real-time assembly landscape of bacterial 30S translation initiation complex. Nature Structural and Molecular Biology 19 (6), S. 609 - 615 (2012)
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    Milon, P.; Carotti, M.; Konevega, A. L.; Wintermeyer, W.; Rodnina, M. V.; Gualerzi, C. O.: The ribosome-bound initiation factor 2 recruits initiator tRNA to the 30S initiation complex. EMBO Reports 11 (4), S. 312 - 316 (2010)
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