Publications of K. Hatje

Journal Article (10)

1.
Journal Article
Pearce, S. L.; Clarke, D. F.; East, P. D.; Elfekih, S.; Gordon, K. H. J.; Jermiin, L. S.; McGaughran, A.; Oakeshott, J. G.; Papanicolaou, A.; Perera, O. P. et al.; Rane, R. V.; Richards, S.; Tay, W. T.; Walsh, T. K.; Anderson, A.; Anderson, C. J.; Asgari, S.; Board, P. G.; Bretschneider, A.; Campbell, P. M.; Chertemps, T.; Christeller, J. T.; Coppin, C. W.; Downes, S. J.; Duan, G.; Farnsworth, C. A.; Good, R. T.; Han, L. B.; Han, Y. C.; Hatje, K.; Horne, I.; Huang, Y. P.; Hughes, D. S. T.; Jacquin-Joly, E.; James, W.; Jhangiani, S.; Kollmar, M.; Kuwar, S. S.; Li, S.; Liu, N. Y.; Maibeche, M. T.; Miller, J. R.; Montagne, N.; Perry, T.; Qu, J.; Song, S. V.; Sutton, G. G.; Vogel, H.; Walenz, B. P.; Xu, W.; Zhang, H. J.; Zou, Z.; Batterham, P.; Edwards, O. R.; Feyereisen, R.; Gibbs, R. A.; Heckel, D. G.; McGrath, A.; Robin, C.; Scherer, S. E.; Worley, K. C.; Wu, Y. D.: Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species. BMC Biology 15, 63 (2017)
2.
Journal Article
Simm, D.; Hatje, K.; Kollmar, M.: Waggawagga: Comparative visualization of coiled-coil predictions and detection of stable single α-helices (SAH domains). Bioinformatics 31 (5), pp. 767 - 769 (2015)
3.
Journal Article
Horwege, S.; Lindner, S.; Boden, M.; Hatje, K.; Kollmar, M.; Leimeister, C. A.; Morgenstern, B.: Spaced words and kmacs: Fast alignment-free sequence comparison based on inexact word matches. Nucleic Acids Research 42 (W1), pp. W7 - W11 (2014)
4.
Journal Article
Hatje, K.; Kollmar, M.: Kassiopeia: A database and web application for the analysis of mutually exclusive exomes of eukaryotes. BMC Genomics 15, 115 (2014)
5.
Journal Article
Kollmar, M.; Hatje, K.: Shared gene structures and clusters of mutually exclusive spliced exons within the metazoan muscle myosin heavy chain genes. PLoS One 9 (2), e88111 (2014)
6.
Journal Article
Hatje, K.; Kollmar, M.: Expansion of the mutually exclusive spliced exome in Drosophila. Nature Communications 4, 2460 (2013)
7.
Journal Article
Hatje, K.; Hammesfahr, B.; Kollmar, M.: WebScipio: Reconstructing alternative splice variants of eukaryotic proteins. Nucleic Acids Research 41 (W1), pp. W504 - W509 (2013)
8.
Journal Article
Hatje, K.; Kollmar, M.: A phylogenetic analysis of the Brassicales clade based on an alignment-free sequence comparison method. Frontiers in Plant Science 3, 192 (2012)
9.
Journal Article
Pillmann, H.; Hatje, K.; Odronitz, F.; Hammesfahr, B.; Kollmar, M.: Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homology. BMC Bioinformatics 12, 270 (2011)
10.
Journal Article
Hatje, K.; Keller, O.; Hammesfahr, B.; Pillmann, H.; Waack, S.; Kollmar, M.: Cross-species protein sequence and gene structure prediction with fine-tuned Webscipio 2.0 and Scipio. BMC Research Notes 4 (1), 265 (2011)

Book Chapter (1)

11.
Book Chapter
Hatje, K.; Kollmar, M.: Predicting tandemly arrayed gene duplicates with WebScipio. In: Gene duplication, pp. 59 - 76 (Ed. Friedberg, F.). InTech, Rijeka/Kroatien (2011)

Thesis - PhD (1)

12.
Thesis - PhD
Hatje, K.: Genome-wide analysis of mutually exclusive splicing. Dissertation, Georg-August-Universität, Göttingen (2013)
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