Search results

Journal Article (4)

  1. Journal Article
    Briones, R.; Blau, C.; Kutzner, C.; de Groot, B. L.; Aponte-Santamaría, C.: GROmaρs: A GROMACS-based toolset to analyze density maps derived from molecular dynamics simulations. Biophysical Journal 116 (1), pp. 4 - 11 (2019)
  2. Journal Article
    Bock, L. V.; Blau, C.; Vaiana, A. C.; Grubmüller, H.: Dynamic contact network between ribosomal subunits enables rapid large-scale rotation during spontaneous translocation. Nucleic Acids Research 43 (14), pp. 6747 - 6760 (2015)
  3. Journal Article
    Blau, C.; Grubmüller, H.: g_contacts: Fast contact search in bio-molecular ensemble data. Computer Physics Communications 184 (12), pp. 2856 - 2859 (2013)
  4. Journal Article
    Bock, L. V.; Blau, C.; Schröder, G. F.; Davydov, I. I.; Fischer, N.; Stark, H.; Rodnina, M. V.; Vaiana, A. C.; Grubmüller, H.: Energy barriers and driving forces in tRNA translocation through the ribosome. Nature Structural and Molecular Biology 20 (12), pp. 1390 - 1396 (2013)

Conference Paper (15)

  1. Conference Paper
    Briones, R.; Blau, C.; Kutzner, C.; de Groot, B. L.; Aponte-Santamaria, C.: Gromaps: A Gromacs-based toolset to analyse density maps derived from molecular dynamics simulations. 63rd Annual Meeting of the Biophysical-Society, Baltimore, MD, March 02, 2019 - March 06, 2019. Biophysical Journal (2019)
  2. Conference Paper
    Blau, C.; Lenner, N.; Kutzner, C.; Grubmüller, H.; Lindahl, E.: From CRYO-EM densities to atom coordinates and ensembles with Bayes approach. 60th Annual Meeting of the Biophysical-Society, Los Angeles, CA, February 27, 2016 - March 02, 2016. Biophysical Journal 110 (Suppl 1), pp. 156A - 157A (2016)
  3. Conference Paper
    Bock, L. V.; Blau, C.; Vaiana, A. C.; Grubmüller, H.: Low energy barriers and a dynamic contact network between ribosomal subunits enable Rapid tRNA translocation. 60th Annual Meeting of the Biophysical-Society, Los Angeles, CA, February 27, 2016 - March 02, 2016. Biophysical Journal 110 (Suppl 1), p. 3A - 3A (2016)
  4. Conference Paper
    Blau, C.; Bock, L.; Kutzner, C.; Vaiana, A.; Grubmüller, H.: Bayesian cryo-EM refinement. 59th Annual Meeting of the Biophysical-Society, Baltimore/MD, February 07, 2015 - February 11, 2015. Biohysical Journal 108 (Suppl. 1), p. 470a - 470a (2015)
  5. Conference Paper
    Bock, L. V.; Blau, C.; Vaiana, A. C.; Grubmüller, H.: Balanced interactions between ribosomal subunits allow rapid large-scale rotation. Biophysical Journal 108 (Suppl. 1), p. 26A - 26A (2015)
  6. Conference Paper
    Vaiana, A. C.; Kutzner, C.; Bock, L. V.; Blau, C.; Grubmüller, H.: Structural determinants of hybrid state intermediates of the bacterial ribosome. 59th Annual Meeting of the Biophysical-Society, Baltimore, February 07, 2015 - February 11, 2015. Biophysical Journal 108 (Supplement 1), p. 318a - 318a (2015)
  7. Conference Paper
    Blau, C.; Bock, L. V.; Schröder, G. F.; Davydov, I.; Fischer, N.; Stark, H.; Rodnina, M. V.; Vaiana, A. C.; Grubmüller, H.: Ribosomal kinetics and concerted motions from nanoseconds to seconds. 58th Annual Meeting of the Biophysical-Society, San Francisco, CA, February 15, 2014 - February 19, 2014. Biophysical Journal 106 (2, Suppl. 1), p. 250a (2014)
  8. Conference Paper
    Bock, L. V.; Blau, C.; Vaiana, A. C.; Grubmüller, H.: Concerted interactions between ribosomal subunits allow for large-scale rotations. 58th Annual Meeting of the Biophysical-Society, San Francisco, CA, February 15, 2014 - February 19, 2014. Biophysical Journal 106 (Supplement 1), p. 491a - 491a (2014)
  9. Conference Paper
    Bock, L. V.; Blau, C.; Schröder, G. F.; Davydov, I.; Fischer, N.; Stark, H.; Rodnina, M. V.; Vaiana, A. C.; Grubmüller, H.: Rapid and stable transfer RNA translocation through the ribosome ensured by specific contact mechanisms. 58th Annual Meeting of the Biophysical-Society, San Francisco, CA, February 15, 2014 - February 19, 2014. Biophysical Journal 106 (Supplement 1), p. 493a - 493a (2014)
  10. Conference Paper
    Rauscher, S.; Gapsys, V.; Volkhardt, A.; Blau, C.; de Groot, B. L.; Grubmüller, H.: Structural ensembles of intrinsically disordered proteins depend strongly on force field. 58th Annual Meeting of the Biophysical-Society, San Francisco, CA, February 15, 2014 - February 19, 2014. Biophysical Journal 106 (2, Suppl. 1), p. 271a (2014)
  11. Conference Paper
    Vaiana, A. C.; Kutzner, C.; Bock, L. V.; Blau, C.; Grubmüller, H.: Refining crystal structures against Cryo-EM data using molecular dynamics simulations to obtain a complete atomistic pathway of transfer RNA translocation. 58th Annual Meeting of the Biophysical-Society, San Francisco, CA, February 15, 2014 - February 19, 2014. Biophysical Journal 106 (Supplement 1), p. 240a - 240a (2014)
  12. Conference Paper
    Blau, C.; Bock, L. V.; Schröder, G.; Fischer, N.; Stark, H.; Rodnina, M. V.; Vaiana, A. C.; Grubmüller, H.: Rate estimates from sampling sparse transitions: TRNA motion limits transitions between ribosomal translocation intermediates. 57th Annual Meeting of the Biophysical-Society, Philadelphia/PA, February 02, 2013 - February 06, 2013. Biophysical Journal 104 (Supplement 1), p. 663A - 663A (2013)
  13. Conference Paper
    Bock, L. V.; Blau, C.; Schröder, G.; Fischer, N.; Stark, H.; Rodnina, M. V.; Vaiana, A. C.; Grubmüller, H.: Mechanisms for efficient TRNA translocation through the ribosome. 57th Annual Meeting of the Biophysical-Society, Philadelphia, PA, February 02, 2013 - February 06, 2013. Biophysical Journal 104 (Supplement 1), p. 16A - 16A (2013)
  14. Conference Paper
    Vaiana, A. C.; Bock, L. V.; Blau, C.; Schröder, G.; Fischer, N.; Stark, H.; Rodnina, M. V.; Grubmüller, H.: Modulation of intersubunit interactions during tRNA translocation through the ribosome. 57th Annual Meeting of the Biophysical-Society, Philadelphia, February 02, 2013 - February 06, 2013. Biophysical Journal 104 (Supplement 1), p. 258A - 258A (2013)
  15. Conference Paper
    Vaiana, A. C.; Bock, L. V.; Blau, C.; Fischer, N.; Stark, H.; Wintermeyer, W.; Rodnina, M. V.; Grubmüller, H.: Molecular dynamics simulations of ribosomal translocation based on cryo-EM data. 8th EBSA European Biophysics Congress, Budapest, HUNGARY, August 23, 2011 - August 27, 2011. European Biophysics Journal with Biophysics Letters 40 (Supplement 1), pp. 106 - 107 (2011)

Thesis - PhD (1)

  1. Thesis - PhD
    Blau, C.: Transfer RNA translocation through the ribosome. Combining large scale system simulations with experimental data. Dissertation, 102 pp., Georg-August-Universität, Göttingen (2014)
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