Publikationen von J. Söding

Zeitschriftenartikel (106)

61.
Zeitschriftenartikel
Armache, J. P.; Jarasch, A.; Anger, A. M.; Villa, E.; Becker, T.; Bhushan, S.; Jossinet, F.; Habeck, M.; Dindar, G.; Franckenberg, S. et al.; Marquez, V.; Mielke, T.; Thomm, M.; Berninghausen, O.; Beatrix, B.; Söding, J.; Westhof, E.; Wilson, D. N.; Beckmann, R.: Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-angstrom resolution. Proceedings of the National Academy of Sciences of the United States of America 107 (46), S. 19748 - 19753 (2010)
62.
Zeitschriftenartikel
Armache, J. P.; Jarasch, A.; Anger, A. M.; Villa, E.; Becker, T.; Bhushan, S.; Jossinet, F.; Habeck, M.; Dindar, G.; Franckenberg, S. et al.; Marquez, V.; Mielke, T.; Thomm, M.; Berninghausen, O.; Beatrix, B.; Söding, J.; Westhof, E.; Wilson, D. N.; Beckmann, R.: Localization of eukaryote-specific ribosomal proteins in a 5.5-angstrom cryo-EM map of the 80S eukaryotic ribosome. Proceedings of the National Academy of Sciences of the United States of America 107 (46), S. 19754 - 19759 (2010)
63.
Zeitschriftenartikel
Graebsch, A.; Roche, S.; Kostrewa, D.; Söding, J.; Niessing, D.: Of bits and bugs - On the use of bioinformatics and a bacterial crystal structure to solve a eukaryotic repeat-protein structure. PLoS One 5 (10), e13402 (2010)
64.
Zeitschriftenartikel
Mayer, A.; Lidschreiber, M.; Siebert, M.; Leike, K.; Söding, J.; Cramer, P.: Uniform transitions of the general RNA polymerase II transcription complex. Nature Structural and Molecular Biology 17 (10), S. 1272 - 1278 (2010)
65.
Zeitschriftenartikel
Alva, V.; Remmert, M.; Biegert, A.; Lupas, A. N.; Söding, J.: A galaxy of folds. Protein Science 19 (1), S. 124 - 130 (2010)
66.
Zeitschriftenartikel
Lasi, M.; Pauly, B.; Schmidt, N.; Cikala, M.; Stiening, B.; Kaesbauer, T.; Zenner, G.; Popp, T.; Wagner, A.; Knapp, R. T. et al.; Huber, A. H.; Grunert, M.; Söding, J.; David, C. N.; Boettger, A.: The molecular cell death machinery in the simple cnidarian Hydra includes an expanded caspase family and pro- and anti-apoptotic Bcl-2 proteins. Cell Research 20 (7), S. 812 - 825 (2010)
67.
Zeitschriftenartikel
Remmert, M.; Biegert, A.; Linke, D.; Lupas, A. N.; Soeding, J.: Evolution of outer membrane beta-barrels from an ancestral beta beta hairpin. Molecular Biology and Evolution 27 (6), S. 1348 - 1358 (2010)
68.
Zeitschriftenartikel
Biegert, A.; Söding, J.: Sequence context-specific profiles for homology searching. Proceedings of the National Academy of Sciences of the United States of America 106 (10), S. 3770 - 3775 (2009)
69.
Zeitschriftenartikel
Bateman, A.; Finn, R. D.; Sims, P. J.; Wiedmer, T.; Biegert, A.; Söding, J.: Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors. Bioinformatics 25 (2), S. 159 - 162 (2009)
70.
Zeitschriftenartikel
Biegert, A.; Söding, J.: A boost for sequence searching. G.I.T. Laboratory Journal 9-10, S. 22 - 23 (2009)
71.
Zeitschriftenartikel
Hildebrand, A.; Remmert, M.; Biegert, A.; Söding, J.: Fast and accurate automatic structure prediction with HHpred. Proteins: Structure, Function, and Bioinformatics 77 (S9), S. 128 - 132 (2009)
72.
Zeitschriftenartikel
Remmert, M.; Linke, D.; Lupas, A. N.; Söding, J.: HHomp-prediction and classification of outer membrane proteins. Nucleic Acids Research 37 (Suppl. 2), S. W446 - W451 (2009)
73.
Zeitschriftenartikel
Agarwal, V.; Remmert, M.; Biegert, A.; Söding, J.: PDBalert: Automatic, recurrent remote homology tracking and protein structure prediction. BMC Structural Biology 8, 51 (2008)
74.
Zeitschriftenartikel
Jasiak, A. J.; Hartmann, H.; Karakasili, E.; Kalocsay, M.; Flatley, A.; Kremmer, E.; Strässer, K.; Martin, D. E.; Söding, J.; Cramer, P.: Genome-associated RNA polymerase II includes the dissociable Rpb4/7 subcomplex. The Journal of Biological Chemistry 283, S. 26423 - 26427 (2008)
75.
Zeitschriftenartikel
Chaudhuri, I.; Söding, J.; Lupas, A. N.: Evolution of the beta-propeller fold. Proteins: Structure, Function, and Bioinformatics 71 (2), S. 795 - 803 (2008)
76.
Zeitschriftenartikel
Biegert, A.; Söding, J.: De novo identification of highly diverged protein repeats by probabilistic consistency. Bioinformatics 24 (6), S. 807 - 814 (2008)
77.
Zeitschriftenartikel
Fischer, J. D.; Mayer, C. E.; Söding, J.: Prediction of protein functional residues from sequence by probability density estimation. Bioinformatics 24 (5), S. 613 - 620 (2008)
78.
Zeitschriftenartikel
Hsiao, N. H.; Söding, J.; Linke, D.; Lange, C.; Hertweck, C.; Wohlleben, W.; Takano, E.: ScbA from Streptomyces coelicolor A3(2) has homology to fatty acid synthases and is able to synthesize-butyrolactones. Microbiology/SGM 153 (5), S. 1394 - 1404 (2007)
79.
Zeitschriftenartikel
Alva, V.; Ammelburg, M.; Söding, J.; Lupas, A. N.: On the origin of the histone fold. BMC Structural Biology 7, 17 (2007)
80.
Zeitschriftenartikel
Karpenahalli, M. R.; Lupas, A. N.; Söding, J.: TPRpred: A tool for prediction of TPR-, PPR- and SELI-like repeats from protein sequences. BMC Bioinformatics 8, 2 (2007)
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