Publikationen

Zeitschriftenartikel (9776)

1.
Zeitschriftenartikel
Lapolla, A.; Godec, A.: BetheSF V2: 3-point propagator and additional external potentials. Computer Physics Communications 269, 108131 (2021)
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2.
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Fianu, I.; Chen, Y.; Dienemann, C.; Dybkov, O.; Linden, A.; Urlaub, H.; Cramer, P.: Structural basis of Integrator-mediated transcription regulation. Science 374 (6569), S. 883 - 887 (2021)
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3.
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Bodenhausen, G.; Ernst, M.; Griesinger, C.; Keller, T.; Kessler, H.; Meier, B.; Wokaun, A.: Richard Ernst (1933–2021). Angewandte Chemie International Edition 60 (45), S. 23944 - 23945 (2021)
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4.
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Butkevich, A. N.; Weber, M.; Cereceda Delgado, A.R.; Ostersehlt, L. M.; d'Este, E.; Hell, S. W.: Photoactivatable fluorescent dyes with hydrophilic caging groups and their use in multicolor nanoscopy. Journal of the American Chemical Society, In Press (2021)
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5.
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Lohner, P.; Zmyslia, M.; Thurn, J.; Pape, J. K.; Gerasimaite, R.; Keller-Findeisen, J.; Groeer, S.; Deuringer, B.; Süss, R.; Walther, A. et al.; Hell, S. W.; Lukinavičius, G.; Hugel, T.; Jessen-Trefzer, C.: Inside a shell – organometallic catalysis inside encapsulin nanoreactors. Angewandte Chemie International Edition 133 (44), S. 24028 - 24034 (2021)
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6.
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Vemulapalli, S. P.; Becker, S.; Griesinger, C.; Rezaei-Ghaleh, N.: Combined high-pressure and multiquantum NMR and molecular simulation propose a role for N-terminal salt bridges in amyloid-beta. The Journal of Physical Chemistry Letters 12 (40), S. 9933 - 9939 (2021)
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7.
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Petrychenko, V.; Peng, B. Z.; Schwarzer, A. C. d. A. P.; Peske, F.; Rodnina, M. V.; Fischer, N.: Structural mechanism of GTPase-powered ribosome-tRNA movement. Nature Communications 12 (1), 5933 (2021)
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8.
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Güttler, T.; Aksu, M.; Dickmanns, A.; Stegmann, K. M.; Gregor, K.; Rees, R.; Taxer, W.; Rymarenko, O.; Schünemann, J.; Dienemann, C. et al.; Gunkel, P.; Mussil, B.; Krull, J.; Teichmann, U.; Groß, U.; Cordes, V.; Dobbelstein, M.; Görlich, D.: Neutralization of SARS-CoV-2 by highly potent, hyperthermostable, and mutation-tolerant nanobodies. EMBO Journal 40 (19), e107985 (2021)
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9.
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Zhang, R.; Mirdita, M.; Levy Karin, E.; Norroy, C.; Galiez, C.; Söding, J.: SpacePHARER: sensitive identification of phages from CRISPR spacers in prokaryotic hosts. Bioinformatics 37 (19), S. 3364 - 3366 (2021)
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10.
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Binotti, B.; Jahn, R.; Pérez-Lara, A.: An overview of the synaptic vesicle lipid composition. Archives of Biochemistry and Biophysics 709, 108966 (2021)
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11.
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Mese, K.; Bunz, O.; Volkwein, W.; Vemulapalli, S. P.; Zhang, W. L.; Schellhorn, S.; Heenemann, K.; Rueckner, A.; Sing, A.; Vahlenkamp, T.W. et al.; Severing, A. L.; Gao, J.; Aydin, M.; Jung, D.; Bachmann, H. S.; Zanker, K. S.; Busch, U.; Baiker, A.; Griesinger, C.; Griesinger, C.; Ehrhardt, A.: Enhanced antiviral function of magnesium chloride-modified Heparin on a broad spectrum of viruses. Journal of Molecular Sciences 22 (18), 10075 (2021)
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12.
Zeitschriftenartikel
Mirdita, M.; Steinegger, M.; Breitwieser, F.; Söding, J.; Levy Karin, E.: Fast and sensitive taxonomic assignment to metagenomic contigs. Bioinformatics 37 (18), S. 3029 - 3031 (2021)
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13.
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Korchak, S.; Kaltschnee, L.; Dervisoglu, R.; Andreas, L. B.; Griesinger, C.; Glöggler, S.: Spontaneous enhancement of magnetic resonance signals using a RASER. Angewandte Chemie International Edition 60 (38), S. 20984 - 20990 (2021)
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14.
Zeitschriftenartikel
Karschin, N.; Krenek, S.; Heyer, D.; Griesinger, C.: Extension and improvement of the methanol-d4 NMR thermometer calibration. Magnetic Resonance in Chemistry, In Press (2021)
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15.
Zeitschriftenartikel
Lapolla, A.; Vossel, M.; Godec, A.: Time- and ensemble-average statistical mechanics of the Gaussian network model. Journal of Physics A 54 (35), 355601 (2021)
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16.
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Belardinelli, R.; Sharma, H.; Peske, F.; Rodnina, M. V.: Perturbation of ribosomal subunit dynamics by inhibitors of tRNA translocation. RNA 27 (9), S. 981 - 990 (2021)
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17.
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Bhatta, A.; Dienemann, C.; Cramer, P.; Hillen, H.: Structural basis of RNA processing by human mitochondrial RNase P. Nature Structural and Molecular Biology 28 (9), S. 713 - 723 (2021)
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18.
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Kabinger, F.; Stiller, C.; Schmitzova, J.; Dienemann, C.; Kokic, G.; Hillen, H. S.; Höbartner, C.; Cramer, P.: Mechanism of molnupiravir-induced SARS-CoV-2 mutagenesis. Nature Structural and Molecular Biology 28 (9), S. 740 - 746 (2021)
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19.
Zeitschriftenartikel
Nagy, G.; Grubmüller, H.: Implementation of a Bayesian secondary structure estimation method for the SESCA circular dichroism analysis package. Computer Physics Communications 266, 108022 (2021)
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20.
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Stegmann, K. M.; Dickmanns, A.; Gerber, S.; Nikolova, V.; Klemke, L.; Manzini, V.; Schlösser, D.; Bierwirth, C.; Freund, J.; Sitte, M. et al.; Lugert, R.; Salinas, G.; Meister, T. L.; Pfaender, S.; Görlich, D.; Wollnik, B.; Groß, U.; Dobbelstein, M.: The folate antagonist methotrexate diminishes replication of the coronavirus SARS-CoV-2 and enhances the antiviral efficacy of remdesivir in cell culture models. Virus Research 302, 198469 (2021)
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21.
Zeitschriftenartikel
Fingerhut, J.; Borodin, D.; Schwarzer, M.; Skoulatakis, G.; Auerbach, D. J.; Wodtke, A. M.; Kitsopoulos, T. N.: The barrier for CO2 functionalization to formate on hydrogenated Pt. Journal of Physical Chemistry A 125 (34), S. 7396 - 7405 (2021)
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22.
Zeitschriftenartikel
Jochheim, F. A.; Tegunov, D.; Hillen, H. S.; Schmitzova, J.; Kokic, G.; Dienemann, C.; Cramer, P.: The structure of a dimeric form of SARS-CoV-2 polymerase. Communications Biology 4, 999 (2021)
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23.
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Borodin, D.; Schwarzer, M.; Hahn, H. W.; Fingerhut, J.; Wang, Y.; Auerbach, D. J.; Guo, H.; Schroeder, J.; Kitsopoulos, T. N.; Wodtke, A. M.: The puzzle of rapid hydrogen oxidation on Pt(111). Molecular Physics, In Press; e1966533 (2021)
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24.
Zeitschriftenartikel
Hartich, D.; Godec, A.: Thermodynamic uncertainty relation bounds the extent of anomalous diffusion. Physical Review Letters 127 (8), 080601 (2021)
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25.
Zeitschriftenartikel
Mironenko, A.; Zachariae, U.; de Groot, B. L.; Kopec, W.: The persistent question of potassium channel permeation mechanisms. Journal of Molecular Biology 433 (17), 167002 (2021)
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26.
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Nair, R. M.; Seenivasan, A.; Liu, B.; Chen, D.; Lowe, E. D.; Lorenz, S.: Reconstitution and structural analysis of a HECT ligase-ubiquitin complex via an activity-based probe. ACS Chemical Biology, In Press (2021)
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27.
Zeitschriftenartikel
Zhang, Z.; Rigo, N.; Dybkov, O.; Fourmann, J. B.; Will, C. L.; Kumar, V.; Urlaub, H.; Stark, H.; Lührmann, R.: Structural insights into how Prp5 proofreads the pre-mRNA branch site. Nature 596 (7871), S. 296 - 300 (2021)
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28.
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Zumer, K.; Maier, K. C.; Farnung, L.; Jaeger, M. G.; Rus, P.; Winter, G.; Cramer, P.: Two distinct mechanisms of RNA polymerase II elongation stimulation in vivo. Molecular Cell 81 (15), S. 3096 - 3109.e8 (2021)
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29.
Zeitschriftenartikel
Vemulapalli, S. P.; Fuentes-Monteverde, J. C.; Karschin, N.; Oji, T.; Griesinger, C.; Wolkenstein, K.: Structure and absolute configuration of phenanthro-perylene quinone pigments from the deep-sea crinoid Hypalocrinus naresianus. Marine Drugs 19 (8), 445 (2021)
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30.
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Helm, M. S.; Dankovich, T. M.; Mandad, S.; Rammner, B.; Jähne, S.; Salimi, V.; Koerbs, C.; Leibrandt, R.; Urlaub, H.; Schikorski, T. et al.; Rizzoli, S. O.: A large-scale nanoscopy and biochemistry analysis of postsynaptic dendritic spines. Nature Neuroscience 24 (8), S. 1151 - 1162 (2021)
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31.
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Quan, J.; Chang, Y.; Li, Z.; Zhao, Y.; Luo, Z.; Wu, Y.; Zhang, S.; Chen, Z.; Yang, J.; Yuan, K. et al.; Yang, X.; Krüger, B. C.; Schwarzer, D.; Wodtke, A. M.; Park, G. B.: A free electron laser-based 1+1′ resonance-enhanced multiphoton ionization scheme for rotationally resolved detection of OH radicals with correct relative intensities. Journal of Molecular Spectroscopy 380, 111509 (2021)
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32.
Zeitschriftenartikel
Wang, H.; Xiong, L.; Cramer, P.: Structures and implications of TBP–nucleosome complexes. Proceedings of the National Academy of Sciences of the USA 118 (30), e2108859118 (2021)
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33.
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Beckert, B.; Leroy, E. C.; Sothiselvam, S.; Bock, L. V.; Svetlov, M. S.; Graf, M.; Arenz, S.; Abdelshahid, M.; Seip, B.; Grubmüller, H. et al.; Mankin, A. S.; Innis, C. A.; Vàzquez-Laslop, N.; Wilson, D. N.: Structural and mechanistic basis for translation inhibition by macrolide and ketolide antibiotics. Nature Communications 12, 4466 (2021)
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34.
Zeitschriftenartikel
Schilbach, S.; Aibara, S.; Dienemann, C.; Grabbe, F.; Cramer, P.: Structure of RNA polymerase II pre-initiation complex at 2.9 Å defines initial DNA opening. Cell 184 (15), S. 4064 - 4072.e28 (2021)
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35.
Zeitschriftenartikel
King, A. J.; Songdej, D.; Downes, D. J.; Beagrie, R. A.; Liu, S.; Buckley, M.; Hua, P.; Suciu, M. C.; Oudelaar, A. M.; Hanssen, L. L. P. et al.; Jeziorska, D.; Roberts, N.; Carpenter, S. J.; Francis, H.; Telenius, J.; Olijnik, A.-A.; Sharpe, J. A.; Sloane-Stanley, J.; Eglinton, J.; Kassouf, M. T.; Orkin, S. H.; Pennacchio, L. A.; Davies, J. O. J.; Hughes, J. R.; Higgs, D. R.; Babbs, C.: Reactivation of a developmentally silenced embryonic globin gene. Nature Communications 12, 4439 (2021)
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36.
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Lecroart, L.; Hertl, N.; Dorenkamp, Y.; Jiang, H.; Kitsopoulos, T. N.; Kandratsenka, A.; Bünermann, O.; Wodtke, A. M.: Adsorbate modification of electronic nonadiabaticity: H atom scattering from p(2 × 2) O on Pt(111). The Journal of Chemical Physics 155 (3), 034702 (2021)
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37.
Zeitschriftenartikel
García-Martínez, J.; Medina, D. A.; Bellvís, P.; Sun, M.; Cramer, P.; Chávez, S.; Pérez-Ortín, J. E.: The total mRNA concentration buffering system in yeast is global rather than gene-specific. RNA, In Press (2021)
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38.
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Chen, Y.; Vos, S. M.; Dienemann, C.; Ninov, M.; Urlaub, H.; Cramer, P.: Allosteric transcription stimulation by RNA polymerase II super elongation complex. Molecular Cell 81 (16), S. 3386 - 3399.e10 (2021)
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39.
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Hertl, N.; Kandratsenka, A.; Bünermann, O.; Wodtke, A. M.: Multibounce and subsurface scattering of H atoms colliding with a van der Waals solid. The Journal of Physical Chemistry A 125 (26), S. 5745 - 5762 (2021)
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40.
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Hertl, N.; Martin-Barrios, R.; Galparsoro, O.; Larrégaray, P.; Auerbach, D. J.; Schwarzer, D.; Wodtke, A. M.; Kandratsenka, A.: Random force in molecular dynamics with electronic friction. The Journal of Physical Chemistry C 125 (26), S. 14468 - 14473 (2021)
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41.
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Absmeier, E.; Vester, K.; Ghane, T.; Burakovskiy, D. E.; Milon, P.; Imhof, P.; Rodnina, M. V.; Santos, K. F.; Wahl, M. C.: Long-range allostery mediates cooperative adenine nucleotide binding by the Ski2-like RNA helicase Brr2. Journal of Biological Chemistry 297 (1), 100829 (2021)
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42.
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Huang, X.; Hu, H.; Webster, A.; Zou, F.; Du, J.; Patel, D. J.; Sachidanandam, R.; Toth, K. F.; Aravin, A. A.; Li, S.: Binding of guide piRNA triggers methylation of the unstructured N-terminal region of Aub leading to assembly of the piRNA amplification complex. Nature Communications 12, 4061 (2021)
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43.
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Reinhardt, M.; Grubmüller, H.: GROMACS implementation of free energy calculations with non-pairwise variationally derived intermediates. Computer Physics Communications 264, 107931 (2021)
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44.
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Ng, S. C.; Güttler, T.; Görlich, D.: Recapitulation of selective nuclear import and export with a perfectly repeated 12mer GLFG peptide. Nature Communications 12, 4047 (2021)
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45.
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Fang, P.; Ji , Y.; Silbern, I.; Viner, R.; Oellerich, T.; Pan, K. T.; Urlaub, H.: Evaluation and optimization of high-field asymmetric waveform ion-mobility spectrometry for multiplexed quantitative site-specific N-glycoproteomics. Analytical Chemistry 93 (25), S. 8846 - 8855 (2021)
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46.
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Mercier, E.; Wang, X.; Maiti, M.; Wintermeyer, W.; Rodnina, M. V.: Lateral gate dynamics of the bacterial translocon during cotranslational membrane protein insertion. Proceedings of the National Academy of Sciences of the USA 118 (26), e2100474118 (2021)
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47.
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Orth, B.; Sander, B.; Möglich, A.; Diederichs, K.; Eilers, M.; Lorenz, S.: Identification of an atypical interaction site in the BTB domain of the MYC-interacting zinc-finger protein 1. Structure, In Press (2021)
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48.
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Juranek, J. K.; Mukherjee, K.; Jahn, R.; Li, J.-Y.: Coordinated bi-directional trafficking of synaptic vesicle and active zone proteins in peripheral nerves. Biochemical and Biophysical Research Communications 559, S. 92 - 98 (2021)
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49.
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Hubbard, J.; Kobayashi Frisk, M.; Ruppert, E.; Tsai, J. W.; Fuchs, F.; Robin-Choteau, L.; Husse, J.; Husse, J. L.; Calvel, L.; Eichele, G. et al.; Franken, P.; Bourgin, P.: Dissecting and modeling photic and melanopsin effects to predict sleep disturbances induced by irregular light exposure in mice. Preoceedings of the National Academy of Sciences of the USA 118 (25), e2017364118 (2021)
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50.
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Konen, T.; Stumpf, D.; Grotjohann, T.; Jansen, I.; Bossi, M.; Weber, M.; Jensen, N. A.; Hell, S. W.; Jakobs, S.: The positive switching fluorescent protein Padron2 enables live-cell reversible saturable optical linear fluorescence transitions (RESOLFT) nanoscopy without sequential illumination steps. ACS Nano 15 (6), S. 9509 - 9521 (2021)
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Bozhilov, Y. K.; Downes, D. J.; Telenius, J.; Oudelaar, A. M.; Olivier, E. N.; Mountford, J. C.; Hughes, J. R.; Gibbons, R. J.; Higgs, D. R.: A gain-of-function single nucleotide variant creates a new promoter which acts as an orientation-dependent enhancer-blocker. Nature Communications 12, 3806 (2021)
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52.
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Martinez Hernandez, A.; Silbern, I.; Geffers, I.; Tatenhorst, L.; Becker, S.; Urlaub, H.; Zweckstetter, M.; Griesinger, C.; Eichele, G.: Low-Expressing synucleinopathy mouse models based on oligomer-forming mutations and C-terminal truncation of α-synuclein. Frontiers in Neuroscience 15, 643391 (2021)
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53.
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Hillen, H. S.; Lavdovskaia, E.; Nadler, F.; Hanitsch, E.; Linden, A.; Bohnsack, K. E.; Urlaub, H.; Richter-Dennerlein, R.: Structural basis of GTPase-mediated mitochondrial ribosome biogenesis and recycling. Nature Communications 12, 3672 (2021)
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54.
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Witkowska, A.; Heinz, L. P.; Grubmüller, H.; Jahn, R.: Tight docking of membranes before fusion represents a novel, metastable state with unique properties. Nature Communications 12, 3606 (2021)
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Aevarsson, A.; Kaczorowska, A.-K.; Adalsteinsson, B. T.; Ahlqvist, J.; Al-Karadaghi, S.; Altenbuchner, J.; Arsin, H.; Átlasson, Ú. Á.; Brandt, D.; Cichowicz-Cieślak, M. et al.; Cornish, K. A. S.; Courtin, J.; Dabrowski, S.; Dahle, H.; Djeffane, S.; Dorawa, S.; Dusaucy, J.; Enault, F.; Fedøy, A.-E.; Freitag-Pohl, S.; Fridjonsson, O. H.; Galiez, C.; Glomsaker, E.; Guérin, M.; Gundesø, S. E.; Gudmundsdóttir, E. E.; Gudmundsson, H.; Håkansson, M.; Henke, C.; Helleux, A.; Henriksen, J. R.; Hjörleifdóttir, S.; Hreggvidsson, G. O.; Jasilionis, A.; Jochheim, A.; Jónsdóttir, I.; Jónsdóttir, L. B.; Jurczak-Kurek, A.; Kaczorowski, T.; Kalinowski, J.; Kozlowski, L. P.; Krupovic, M.; Kwiatkowska-Semrau, K.; Lanes, O.; Lange, J.; Lebrat, J.; Linares-Pastén, J.; Liu, Y.; Lorentsen, S. A.; Lutterman, T.; Mas, T.; Merré, W.; Mirdita, M.; Morzywołek, A.; Ndela, E. O.; Karlsson, E. N.; Olgudóttir, E.; Pedersen, C.; Perler, F.; Pétursdóttir, S. K.; Plotka, M.; Pohl, E.; Prangishvili, D.; Ray, J. L.; Reynisson, B.; Róbertsdóttir, T.; Sandaa, R.-A.; Sczyrba, A.; Skírnisdóttir, S.; Söding, J.; Solstad, T.; Steen, I. H.; Stefánsson, S. K.; Steinegger, M.; Overå, K. S.; Striberny, B.; Svensson, A.; Szadkowska, M.; Tarrant, J.; Terzian, P.; Tourigny, M.; van den Bergh, T.; Vanhalst, J.; Vincent, J.; Vroling, B.; Walse, B.; Wang, L.; Watzlawick, H.; Welin, M.; Werbowy, O.; Wons, E.; Zhang, R.: Going to extremes: A metagenomic journey into the dark matter of life. FEMS Microbiology Letters 368 (12), fnab067 (2021)
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Hua, P.; Badat, M.; Hanssen, L. L. P.; Hentges, L. D.; Crump, N.; Downes, D. J.; Jeziorska, D. M.; Oudelaar, A. M.; Schwessinger, R.; Taylor, S. et al.; Milne, T. A.; Hughes, J. R.; Higgs, D. R.; Davies, J. O. J.: Defining genome architecture at base-pair resolution. Nature, In Press (2021)
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Pokern, Y.; Eltzner, B.; Huckemann, S. F.; Beeken, C.; Stubbe, J.; Tkach, I.; Bennati, M.; Hiller, M.: Statistical analysis of ENDOR spectra. Proceedings of the National Academy of Sciences of the USA 118 (27), e2023615118 (2021)
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Yildirim, A.; Mozaffari-Jovin, S.; Wallisch, A. K.; Schäfer, J.; Ludwig, S. E. J.; Urlaub, H.; Lührmann, R.; Wolfrum, U.: SANS (USH1G) regulates pre-mRNA splicing by mediating the intra-nuclear transfer of tri-snRNP complexes. Nucleic Acids Research 49 (10), S. 5845 - 5866 (2021)
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59.
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Aibara, S.; Schilbach, S.; Cramer, P.: Structures of mammalian RNA polymerase II pre-initiation complexes. Nature 594 (7861), S. 124 - 128 (2021)
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Borodin, D.; Rahinov, I.; Fingerhut, J.; Schwarzer, M.; Hörandl, S.; Skoulatakis, G.; Schwarzer, D.; Kitsopoulos, T. N.; Wodtke, A. M.: NO binding energies to and diffusion barrier on Pd obtained with velocity-resolved kinetics. The Journal of Physical Chemistry C 125 (21), S. 11773 - 11781 (2021)
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Rengachari, S.; Schilbach, S.; Aibara, S.; Dienemann, C.; Cramer, P.: Structure of human Mediator-RNA polymerase II pre-initiation complex. Nature 594 (7861), S. 129 - 133 (2021)
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Auerbach, D. J.; Tully, J. C.; Wodtke, A. M.: Chemical dynamics from the gas-phase to surfaces. Natural Sciences 1 (1), e10005 (2021)
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63.
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Osman, S.; Mohammad, E.; Lidschreiber, M.; Stuetzer, A.; Bazsó, F. L.; Maier, K. C.; Urlaub, H.; Cramer, P.: The Cdk8 kinase module regulates interaction of the mediator complex with RNA polymerase II. Journal of Biological Chemistry 296, 100734 (2021)
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64.
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Kim, C.; Shon, M. J.; Kim, S. H.; Eun, G. S.; Ryu, J.-K.; Hyeon, C.; Jahn, R.; Yoon, T.-Y.: Extreme parsimony in ATP consumption by 20S complexes in the global disassembly of single SNARE complexes. Nature Communications 12, 3206 (2021)
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Lapolla, A.; Godec, A.: Toolbox for quantifying memory in dynamics along reaction coordinates. Physical Review Research 3 (2), L022018 (2021)
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66.
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Oberbeckmann, E.; Niebauer, V.; Watanabe, S.; Farnung, L.; Moldt, M.; Schmid, A.; Cramer, P.; Peterson, C. L.; Eustermann, S.; Hopfner, K.-P. et al.; Korber, P.: Ruler elements in chromatin remodelers set nucleosome array spacing and phasing. Nature Communications 12, 3232 (2021)
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67.
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Cavazza, T.; Takeda, Y.; Politi, A.; Aushev, M.; Aldag, P.; Baker, C.; Choudhary, M.; Bucevičius, J.; Lukinavičius, G.; Elder, K. et al.; Blayney, M.; Lucas-Hahn, A.; Niemann, H.; Herbert, M.; Schuh, M.: Parental genome unification is highly error-prone in mammalian embryos. Cell 184 (11), S. 2860 - 2877.e22 (2021)
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68.
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Fianu, I.; Dienemann, C.; Aibara, S.; Schilbach, S.; Cramer, P.: Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2. Communications Biology 4, 606 (2021)
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