Journal Article (120)
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31 (5), pp. 674 - 681 (2015)
Context similarity scoring improves protein sequence alignments in the midnight zone. Bioinformatics 52.
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31 (11), pp. 1729 - 1737 (2015)
bbcontacts: Prediction of β-strand pairing from direct coupling patterns. Bioinformatics 53.
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30 (21), pp. 3128 - 3130 (2014)
CCMpred-fast and precise prediction of protein residue-residue contacts from correlated mutations. Bioinformatics 54.
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55 (5), pp. 745 - 757 (2014)
Transcriptome maps of mRNP biogenesis factors define pre-mRNA recognition. Molecular Cell 55.
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511 (7510), pp. E11 - E12 (2014)
Universality of core promoter elements? Nature 56.
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3, e03035 (2014)
A structural model of the active ribosome-bound membrane protein insertase YidC. eLife 57.
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157 (5), pp. 1037 - 1049 (2014)
RECQL5 controls transcript elongation and suppresses genome instability associated with transcription stress. Cell 58.
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10 (4), e1004081 (2014)
In vivo ligands of MDA5 and RIG-I in measles virus-infected cells. PLoS Pathogens 59.
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20 (2), pp. 158 - 160 (2014)
In silico-Funktions- und Strukturvorhersagen bei Proteinen. BIOspektrum 60.
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9 (11), e1003914 (2013)
Recruitment of TREX to the transcription machinery by its direct binding to the phospho-CTD of RNA polymerase II. PLoS Genetics 61.
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155 (5), pp. 1075 - 1087 (2013)
Transcriptome surveillance by selective termination of noncoding RNA synthesis. Cell 62.
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14, 248 (2013)
kClust: Fast and sensitive clustering of large protein sequence databases. BMC Bioinformatics 63.
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23 (1), pp. 181 - 194 (2013)
P-value-based regulatory motif discovery using positional weight matrices. Genome Research 64.
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57, pp. 759 - 765 (2013)
Eph receptors and ephrin class B ligands are expressed at tissue boundaries in Hydra vulgaris. The International Journal of Develomental Biology 65.
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28 (24), pp. 3240 - 3247 (2012)
Discriminative modelling of context-specific amino acid substitution probabilities. Bioinformatics 66.
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484 (7394), pp. 386 - 389 (2012)
DBIRD complex integrates alternative mRNA splicing with RNA polymerase II transcript elongation. Nature 67.
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40 (4), pp. 1509 - 1522 (2012)
The MOF-containing NSL complex associates globally with housekeeping genes, but activates only a defined subset. Nucleic Acids Research 68.
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40 (W1), pp. W104 - W109 (2012)
The XXmotif web server for eXhaustive, weight matriX-based motif discovery in nucleotide sequences. Nucleic Acids Research 69.
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9 (2), pp. 173 - 175 (2012)
HHblits: Lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nature Methods 70.
Journal Article
6 (11), e27595 (2011)
A conserved GA element in TATA-less RNA polymerase II promoters. PLoS One 71.
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7, 539 (2011)
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Molecular Systems Biology 72.
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21 (3), pp. 404 - 411 (2011)
Protein sequence comparison and fold recognition: progress and good-practice benchmarking. Current Opinion in Structural Biology 73.
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6 (2), e16627 (2011)
Different binding properties and function of CXXC zinc finger domains in Dnmt1 and Tet1. PLoS One 74.
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145 (1), pp. 54 - 66 (2011)
The Mre11:Rad50 structure shows an ATP-dependent molecular clamp in DNA double-strand break repair. Cell 75.
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107 (46), pp. 19748 - 19753 (2010)
Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-angstrom resolution. Proceedings of the National Academy of Sciences of the United States of America 76.
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107 (46), pp. 19754 - 19759 (2010)
Localization of eukaryote-specific ribosomal proteins in a 5.5-angstrom cryo-EM map of the 80S eukaryotic ribosome. Proceedings of the National Academy of Sciences of the United States of America 77.
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5 (10), e13402 (2010)
Of bits and bugs - On the use of bioinformatics and a bacterial crystal structure to solve a eukaryotic repeat-protein structure. PLoS One 78.
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17 (10), pp. 1272 - 1278 (2010)
Uniform transitions of the general RNA polymerase II transcription complex. Nature Structural and Molecular Biology 79.
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19 (1), pp. 124 - 130 (2010)
A galaxy of folds. Protein Science 80.
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20 (7), pp. 812 - 825 (2010)
The molecular cell death machinery in the simple cnidarian Hydra includes an expanded caspase family and pro- and anti-apoptotic Bcl-2 proteins. Cell Research 81.
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27 (6), pp. 1348 - 1358 (2010)
Evolution of outer membrane beta-barrels from an ancestral beta beta hairpin. Molecular Biology and Evolution 82.
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106 (10), pp. 3770 - 3775 (2009)
Sequence context-specific profiles for homology searching. Proceedings of the National Academy of Sciences of the United States of America 83.
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25 (2), pp. 159 - 162 (2009)
Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors. Bioinformatics 84.
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9-10, pp. 22 - 23 (2009)
A boost for sequence searching. G.I.T. Laboratory Journal 85.
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77 (S9), pp. 128 - 132 (2009)
Fast and accurate automatic structure prediction with HHpred. Proteins: Structure, Function, and Bioinformatics 86.
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37 (Suppl. 2), pp. W446 - W451 (2009)
HHomp-prediction and classification of outer membrane proteins. Nucleic Acids Research 87.
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8, 51 (2008)
PDBalert: Automatic, recurrent remote homology tracking and protein structure prediction. BMC Structural Biology 88.
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283, pp. 26423 - 26427 (2008)
Genome-associated RNA polymerase II includes the dissociable Rpb4/7 subcomplex. The Journal of Biological Chemistry 89.
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71 (2), pp. 795 - 803 (2008)
Evolution of the beta-propeller fold. Proteins: Structure, Function, and Bioinformatics 90.
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24 (6), pp. 807 - 814 (2008)
De novo identification of highly diverged protein repeats by probabilistic consistency. Bioinformatics 91.
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24 (5), pp. 613 - 620 (2008)
Prediction of protein functional residues from sequence by probability density estimation. Bioinformatics 92.
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153 (5), pp. 1394 - 1404 (2007)
ScbA from Streptomyces coelicolor A3(2) has homology to fatty acid synthases and is able to synthesize-butyrolactones. Microbiology/SGM 93.
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7, 17 (2007)
On the origin of the histone fold. BMC Structural Biology 94.
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8, 2 (2007)
TPRpred: A tool for prediction of TPR-, PPR- and SELI-like repeats from protein sequences. BMC Bioinformatics 95.
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155 (2), pp. 140 - 145 (2006)
Comparative analysis of coiled-coil prediction methods. Journal of Structural Biology 96.
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34, pp. W335 - W339 (2006)
The MPI Bioinformatics toolkit for protein sequence analysis. Nucleic Acids Research (London) 97.
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34, pp. W137 - W142 (2006)
HHrep: de novo protein repeat detection and the origin of TIM barrels. Nucleic Acids Research (London) 98.
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34, pp. W374 - W378 (2006)
HHsenser: Exhaustive transitive profile search using HMM-HMM comparison. Nucleic Acids Research (London) 99.
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62 (4), pp. 415 - 418 (2006)
Expression, crystallization and preliminary X-ray crystallographic studies of the outer membrane protein OmpW from Escherichia coli. Acta Crystallographica Section F: Structural Biology and Crystallization Communications 100.
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13 (6), pp. 919 - 928 (2005)
AbrB-like transcription factors assume a swapped hairpin fold that is evolutionarily related to double-psi beta barrels. Structure