Journal Article (94)

  1. Journal Article
    Stützer, A.; Liokatis, S.; Kiesel, A.; Schwarzer, D.; Sprangers, R.; Söding, J.; Selenko, P.; Fischle, W.: Modulations of DNA contacts by linker histones and post-translational modifications determine the mobility and modifiability of nucleosomal H3 tails. Molecular Cell 61 (2), pp. 247 - 259 (2016)
  2. Journal Article
    Alva, V.; Söding, J.; Lupas, A. N.: A vocabulary of ancient peptides at the origin of folded proteins. eLife 4 (2015)
  3. Journal Article
    Meier, A.; Söding, J.: Automatic prediction of protein 3D Structures by probabilistic multi-template homology modeling. PLoS Computational Biology 11 (10) (2015)
  4. Journal Article
    Mühlbacher, W.; Mayer, A.; Sun, M.; Remmert, M.; Cheung, A. C. M.; Niesser, J.; Söding, J.; Cramer, P.: Structure of Ctk3, a subunit of the RNA polymerase II CTD kinase complex, reveals a non-canonical CTD-interacting domain fold. Proteins: Structure, Function, and Bioinformatics 83 (10), pp. 1849 - 1858 (2015)
  5. Journal Article
    Meier, A.; Söding, J.: Context similarity scoring improves protein sequence alignments in the midnight zone. Bioinformatics 31 (5), pp. 674 - 681 (2015)
  6. Journal Article
    Andreani, J.; Söding, J.: bbcontacts: Prediction of β-strand pairing from direct coupling patterns. Bioinformatics 31 (11) (2015)
  7. Journal Article
    Seemayer, S.; Gruber, M.; Söding, J.: CCMpred-fast and precise prediction of protein residue-residue contacts from correlated mutations. Bioinformatics 30 (21), pp. 3128 - 3130 (2014)
  8. Journal Article
    Bäjen, C.; Torkler, P.; Gressel, S.; Essig, K.; Söding, J.; Cramer, P.: Transcriptome maps of mRNP biogenesis factors define pre-mRNA recognition. Molecular Cell 55 (5), pp. 745 - 757 (2014)
  9. Journal Article
    Siebert, M.; Söding, J.: Universality of core promoter elements? Nature 511 (7510), pp. E11 - E12 (2014)
  10. Journal Article
    Wickles, S.; Singharoy, A.; Andreani, J.; Seemayer, S.; Bischoff, L.; Berninghausen, O.; Söding, J.; Schulten, K.; van der Sluis, E. O.; Beckmann, R.: A structural model of the active ribosome-bound membrane protein insertase YidC. eLife 3 (2014)
  11. Journal Article
    Saponaro, M.; Mitter, R.; Kantidakis, T.; Kelly, G. P.; Heron, M.; Williams, H.; Söding, J.; Stewart, A.; Svejstrup, J. Q.: RECQL5 controls transcript elongation and suppresses genome instability associated with transcription stress. Cell 157 (5), pp. 1037 - 1049 (2014)
  12. Journal Article
    Runge, S.; Sparrer, K. M. J.; Lässig, C.; Hembach, K.; Baum, A.; Garcia-Sastre, A.; Söding, J.; Conzelmann, K. K.; Hopfner, K. P.: In vivo ligands of MDA5 and RIG-I in measles virus-infected cells. PLoS Pathogens 10 (4) (2014)
  13. Journal Article
    Söding, J.: In silico-Funktions- und Strukturvorhersagen bei Proteinen. BIOspektrum 20 (2), pp. 158 - 160 (2014)
  14. Journal Article
    Meinel, D. M.; Burkert-Kautzsch, C.; Kieser, A.; O'Duibhir, E.; Siebert, M.; Mayer, A.; Cramer, P.; Söding, J.; Holstege, F. C.; Sträßer, K.: Recruitment of TREX to the transcription machinery by its direct binding to the phospho-CTD of RNA polymerase II. PLoS Genetics 9 (11) (2013)
  15. Journal Article
    Schulz, D.; Schwalb, B.; Kiesel, A.; Baejen, C.; Torkler, P.; Gagneur, J.; Söding, J.; Cramer, P.: Transcriptome surveillance by selective termination of noncoding RNA synthesis. Cell 155 (5) (2013)
  16. Journal Article
    Hauser, M.; Mayer, C. E.; Söding, J.: kClust: Fast and sensitive clustering of large protein sequence databases. BMC Bioinformatics 14, 248 (2013)
  17. Journal Article
    Hartmann, H.; Guthoehrlein, E. W.; Siebert, M.; Luehr, S.; Söding, J.: P-value-based regulatory motif discovery using positional weight matrices. Genome Research 23 (1), pp. 181 - 194 (2013)
  18. Journal Article
    Tischer, S.; Reineck, M.; Söding, J.; Münder, S.; Böttger, A.: Eph receptors and ephrin class B ligands are expressed at tissue boundaries in Hydra vulgaris. The International Journal of Develomental Biology 57, pp. 759 - 765 (2013)
  19. Journal Article
    Angermueller, C.; Biegert, A.; Söding, J.: Discriminative modelling of context-specific amino acid substitution probabilities. Bioinformatics 28 (24), pp. 3240 - 3247 (2012)
  20. Journal Article
    Close, P.; East, P.; Dirac-Svejstrup, A. B.; Hartmann, H.; Heron, M.; Maslen, S.; Chariot, A.; Söding, J.; Skehel, M.; Svejstrup, J. Q.: DBIRD complex integrates alternative mRNA splicing with RNA polymerase II transcript elongation. Nature 484 (7394), pp. 386 - 389 (2012)
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