Journal Article (105)

41.
Journal Article
Wickles, S.; Singharoy, A.; Andreani, J.; Seemayer, S.; Bischoff, L.; Berninghausen, O.; Söding, J.; Schulten, K.; van der Sluis, E. O.; Beckmann, R.: A structural model of the active ribosome-bound membrane protein insertase YidC. eLife 3, e03035 (2014)
42.
Journal Article
Saponaro, M.; Mitter, R.; Kantidakis, T.; Kelly, G. P.; Heron, M.; Williams, H.; Söding, J.; Stewart, A.; Svejstrup, J. Q.: RECQL5 controls transcript elongation and suppresses genome instability associated with transcription stress. Cell 157 (5), pp. 1037 - 1049 (2014)
43.
Journal Article
Runge, S.; Sparrer, K. M. J.; Lässig, C.; Hembach, K.; Baum, A.; Garcia-Sastre, A.; Söding, J.; Conzelmann, K. K.; Hopfner, K. P.: In vivo ligands of MDA5 and RIG-I in measles virus-infected cells. PLoS Pathogens 10 (4), e1004081 (2014)
44.
Journal Article
Söding, J.: In silico-Funktions- und Strukturvorhersagen bei Proteinen. BIOspektrum 20 (2), pp. 158 - 160 (2014)
45.
Journal Article
Meinel, D. M.; Burkert-Kautzsch, C.; Kieser, A.; O'Duibhir, E.; Siebert, M.; Mayer, A.; Cramer, P.; Söding, J.; Holstege, F. C.; Sträßer, K.: Recruitment of TREX to the transcription machinery by its direct binding to the phospho-CTD of RNA polymerase II. PLoS Genetics 9 (11), e1003914 (2013)
46.
Journal Article
Schulz, D.; Schwalb, B.; Kiesel, A.; Baejen, C.; Torkler, P.; Gagneur, J.; Söding, J.; Cramer, P.: Transcriptome surveillance by selective termination of noncoding RNA synthesis. Cell 155 (5), pp. 1075 - 1087 (2013)
47.
Journal Article
Hauser, M.; Mayer, C. E.; Söding, J.: kClust: Fast and sensitive clustering of large protein sequence databases. BMC Bioinformatics 14, 248 (2013)
48.
Journal Article
Hartmann, H.; Guthoehrlein, E. W.; Siebert, M.; Luehr, S.; Söding, J.: P-value-based regulatory motif discovery using positional weight matrices. Genome Research 23 (1), pp. 181 - 194 (2013)
49.
Journal Article
Tischer, S.; Reineck, M.; Söding, J.; Münder, S.; Böttger, A.: Eph receptors and ephrin class B ligands are expressed at tissue boundaries in Hydra vulgaris. The International Journal of Develomental Biology 57, pp. 759 - 765 (2013)
50.
Journal Article
Angermueller, C.; Biegert, A.; Söding, J.: Discriminative modelling of context-specific amino acid substitution probabilities. Bioinformatics 28 (24), pp. 3240 - 3247 (2012)
51.
Journal Article
Close, P.; East, P.; Dirac-Svejstrup, A. B.; Hartmann, H.; Heron, M.; Maslen, S.; Chariot, A.; Söding, J.; Skehel, M.; Svejstrup, J. Q.: DBIRD complex integrates alternative mRNA splicing with RNA polymerase II transcript elongation. Nature 484 (7394), pp. 386 - 389 (2012)
52.
Journal Article
Feller, C.; Prestel, M.; Hartmann, H.; Straub, T.; Söding, J.; Becker, P. B.: The MOF-containing NSL complex associates globally with housekeeping genes, but activates only a defined subset. Nucleic Acids Research 40 (4), pp. 1509 - 1522 (2012)
53.
Journal Article
Luehr, S.; Hartmann, H.; Söding, J.: The XXmotif web server for eXhaustive, weight matriX-based motif discovery in nucleotide sequences. Nucleic Acids Research 40 (W1), pp. W104 - W109 (2012)
54.
Journal Article
Remmert, M.; Biegert, A.; Hauser, A.; Söding, J.: HHblits: Lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nature Methods 9 (2), pp. 173 - 175 (2012)
55.
Journal Article
Seizl, M.; Hartmann, H.; Hoeg, F.; Kurth, F.; Martin, D. E.; Söding, J.; Cramer, P.: A conserved GA element in TATA-less RNA polymerase II promoters. PLoS One 6 (11), e27595 (2011)
56.
Journal Article
Sievers, F.; Wilm, A.; Dineen, D.; Gibson, T. J.; Karplus, K.; Li, W.; Lopez, R.; McWilliam, H.; Remmert, M.; Söding, J. et al.; Thompson, J. D.; Higgins, D. G.: Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Molecular Systems Biology 7, 539 (2011)
57.
Journal Article
Söding, J.; Remmert, M.: Protein sequence comparison and fold recognition: progress and good-practice benchmarking. Current Opinion in Structural Biology 21 (3), pp. 404 - 411 (2011)
58.
Journal Article
Frauer, C.; Rottach, A.; Meilinger, D.; Bultmann, S.; Fellinger, K.; Hasenoeder, S.; Wang, M.; Qin, W.; Söding, J.; Spada, F. et al.; Leonhardt, H.: Different binding properties and function of CXXC zinc finger domains in Dnmt1 and Tet1. PLoS One 6 (2), e16627 (2011)
59.
Journal Article
Lammens, K.; Bemeleit, D. J.; Moeckel, C.; Clausing, E.; Schele, A.; Hartung, S.; Schiller, C. B.; Lucas, M.; Angermueller, C.; Söding, J. et al.; Straesser, K.; Hopfner, K. P.: The Mre11:Rad50 structure shows an ATP-dependent molecular clamp in DNA double-strand break repair. Cell 145 (1), pp. 54 - 66 (2011)
60.
Journal Article
Armache, J. P.; Jarasch, A.; Anger, A. M.; Villa, E.; Becker, T.; Bhushan, S.; Jossinet, F.; Habeck, M.; Dindar, G.; Franckenberg, S. et al.; Marquez, V.; Mielke, T.; Thomm, M.; Berninghausen, O.; Beatrix, B.; Söding, J.; Westhof, E.; Wilson, D. N.; Beckmann, R.: Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-angstrom resolution. Proceedings of the National Academy of Sciences of the United States of America 107 (46), pp. 19748 - 19753 (2010)
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