Publikationen von Andrea C. Vaiana

Zeitschriftenartikel (7)

1.
Zeitschriftenartikel
Pan, Y.; Pohjolainen, E.; Schmidpeter, P. A. M.; Vaiana, A. C.; Nimigean, C. M.; Grubmüller, H.; Scheuring, S.: Discrimination between cyclic nucleotides in a cyclic nucleotide-gated ion channel. Nature Structural and Molecular Biology 30, S. 512 - 520 (2023)
2.
Zeitschriftenartikel
Lawson, C. L.; Kryshtafovych, A.; Adams, P. D.; Afonine, P. V.; Baker, M. L.; Barad, B. A.; Bond, P.; Burnley, T.; Cao, R.; Cheng, J. et al.; Chojnowski, G.; Cowtan, K.; Dill, K. A.; DiMaio, F.; Farrell, D. P.; Fraser, J. S.; Herzik Jr., M. A. H.; Hoh, S. W.; Hou, J.; Hung, L.-W.; Igaev, M.; Joseph, A. P.; Kihara, D.; Kumar, D.; Mittal, S.; Monastyrskyy, B.; Olek, M.; Palmer, C. M.; Patwardhan, A.; Perez, A.; Pfab, J.; Pintilie, G. D.; Richardson, J. S.; Rosenthal, P. B.; Sarkar, D.; Schäfer, L. U.; Schmid, M. F.; Schröder, G. F.; Shekhar, M.; Si, D.; Singharoy, A.; Terashi, G.; Terwilliger, T. C.; Vaiana, A.; Wang, L.; Wang, Z.; Wankowicz, S. A.; Williams, C. J.; Winn, M.; Wu, T.; Yu, X.; Zhang, K.; Berman, H. M.; Chiu, W.: Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge. Nature Methods 18, S. 156 - 164 (2021)
3.
Zeitschriftenartikel
Igaev, M.; Kutzner, C.; Bock, L. V.; Vaiana, A. C.; Grubmüller, H.: Automated cryo-EM structure refinement using correlation-driven molecular dynamics. eLife 8, e43542 (2019)
4.
Zeitschriftenartikel
Huter, P.; Arenz, S.; Bock, L. V.; Graf, M.; Frister, J. O.; Heuer, A.; Peil, L.; Starosta, A. L.; Wohlgemuth, I.; Peske, F. et al.; Nováček, J.; Berninghausen, O.; Grubmüller, H.; Tenson, T.; Beckmann, R.; Rodnina, M. V.; Vaiana, A. C.; Wilson, D. N.: Structural basis for polyproline-mediated ribosome stalling and rescue by the translation elongation factor EF-P. Molecular Cell 68 (3), S. 515 - 527 (2017)
5.
Zeitschriftenartikel
Arenz, S.; Bock, L. V.; Graf, M.; Innis, C. A.; Beckmann, R.; Grubmüller, H.; Vaiana, A. C.; Wilson, D. N.: A combined cryo-EM and molecular dynamics approach reveals the mechanism of ErmBL-mediated translation arrest. Nature Communications 7, 12026 (2016)
6.
Zeitschriftenartikel
Bock, L. V.; Blau, C.; Vaiana, A. C.; Grubmüller, H.: Dynamic contact network between ribosomal subunits enables rapid large-scale rotation during spontaneous translocation. Nucleic Acids Research 43 (14), S. 6747 - 6760 (2015)
7.
Zeitschriftenartikel
Bock, L. V.; Blau, C.; Schröder, G. F.; Davydov, I. I.; Fischer, N.; Stark, H.; Rodnina, M. V.; Vaiana, A. C.; Grubmüller, H.: Energy barriers and driving forces in tRNA translocation through the ribosome. Nature Structural and Molecular Biology 20 (12), S. 1390 - 1396 (2013)

Konferenzbeitrag (18)

8.
Konferenzbeitrag
Bock, L. V.; Kolar, M. H.; Vaiana, A. C.; Russek, A.; von Ardenne, B.; Grubmüller, H.: Molecular basis for the extra-mitochondrial roles of cytochrome c in cell Life and death. Joint 12th EBSA European Biophysics Congress / 10th IUPAP International Conference on Biological Physics (ICBP), Madrid, Spain, 20. Juli 2019 - 24. Juli 2019. European Biophysics Journal 48 (Suppl 1), S. S52 - S52 (2019)
9.
Konferenzbeitrag
Igaev, M.; Kutzner, C.; Bock, L. V.; Vaiana, A. C.; Grubmüller, H.: Automated cryo-EM structure refinement using correlation -driven molecular dynamics. Joint 12th EBSA European Biophysics Congress / 10th IUPAP International Conference on Biological Physics (ICBP), Madrid, Spain, 20. Juli 2019 - 24. Juli 2019. European Biophysics Journal 48 (Suppl 1), S. S126 - S126 (2019)
10.
Konferenzbeitrag
Vaiana, A. C.; Igaev, M.; Kutzner, C.; Grubmüller, H.: Fully automated correlation-based refinement of atomic models into high resolution cryo-EM density maps. 62nd Annual Meeting of the Biophysical-Society, San Francisco, CA, 17. Februar 2018 - 21. Februar 2018. Biophysical Journal 114 (3), S. 161a - 161a (2018)
11.
Konferenzbeitrag
Bock, L. V.; Kolar, M. H.; Vaiana, A. C.; Grubmüller, H.: Towards a mechanistic understanding of ribosomal function. 19th IUPAB Congress / 11th EBSA Congress, Edinburgh, Scotland, 16. Juli 2017 - 20. Juli 2017. European Biophysics Journal 46 (Suppl_1), S. S43 - S43 (2017)
12.
Konferenzbeitrag
Bock, L. V.; Huter, P. P. H.; Arenz, S.; Graf, M.; Grubmüller, H.; Wilson, D.; Vaiana, A. C.: Mechanisms of sequence dependent translational stalling. 61st Annual Meeting of the Biophysical-Society, New Orleans, LA, 11. Februar 2017 - 15. Februar 2017. Biophysical Journal 112 (Suppl 1), 3 Aufl., S. 30a - 30a (2017)
13.
Konferenzbeitrag
Bock, L. V.; Arenz, S.; Wilson, D. N.; Grubmüller, H.; Vaiana, A. C.: ErmBL translation on the ribosome in the presence of erythromycin is stalled by inhibition of peptide bond formation. 60th Annual Meeting of the Biophysical-Society, Los Angeles, CA, 27. Februar 2016 - 02. März 2016. Biophysical Journal 110 (Suppl 1), 3 Aufl., S. 234A - 234A (2016)
14.
Konferenzbeitrag
Bock, L. V.; Blau, C.; Vaiana, A. C.; Grubmüller, H.: Low energy barriers and a dynamic contact network between ribosomal subunits enable Rapid tRNA translocation. 60th Annual Meeting of the Biophysical-Society, Los Angeles, CA, 27. Februar 2016 - 02. März 2016. Biophysical Journal 110 (Suppl 1), 3 Aufl., S. 3A - 3A (2016)
15.
Konferenzbeitrag
Blau, C.; Bock, L.; Kutzner, C.; Vaiana, A.; Grubmüller, H.: Bayesian cryo-EM refinement. 59th Annual Meeting of the Biophysical-Society, Baltimore/MD, 07. Februar 2015 - 11. Februar 2015. Biohysical Journal 108 (Suppl. 1), S. 470a - 470a (2015)
16.
Konferenzbeitrag
Bock, L. V.; Blau, C.; Vaiana, A. C.; Grubmüller, H.: Balanced interactions between ribosomal subunits allow rapid large-scale rotation. Biophysical Journal 108 (Suppl. 1), S. 26A - 26A (2015)
17.
Konferenzbeitrag
Vaiana, A. C.; Kutzner, C.; Bock, L. V.; Blau, C.; Grubmüller, H.: Structural determinants of hybrid state intermediates of the bacterial ribosome. 59th Annual Meeting of the Biophysical-Society, Baltimore, 07. Februar 2015 - 11. Februar 2015. Biophysical Journal 108 (Supplement 1), S. 318a - 318a (2015)
18.
Konferenzbeitrag
Blau, C.; Bock, L. V.; Schröder, G. F.; Davydov, I.; Fischer, N.; Stark, H.; Rodnina, M. V.; Vaiana, A. C.; Grubmüller, H.: Ribosomal kinetics and concerted motions from nanoseconds to seconds. 58th Annual Meeting of the Biophysical-Society, San Francisco, CA, 15. Februar 2014 - 19. Februar 2014. Biophysical Journal 106 (2, Suppl. 1), S. 250a (2014)
19.
Konferenzbeitrag
Bock, L. V.; Blau, C.; Schröder, G. F.; Davydov, I.; Fischer, N.; Stark, H.; Rodnina, M. V.; Vaiana, A. C.; Grubmüller, H.: Rapid and stable transfer RNA translocation through the ribosome ensured by specific contact mechanisms. 58th Annual Meeting of the Biophysical-Society, San Francisco, CA, 15. Februar 2014 - 19. Februar 2014. Biophysical Journal 106 (Supplement 1), 2 Aufl., S. 493a - 493a (2014)
20.
Konferenzbeitrag
Bock, L. V.; Blau, C.; Vaiana, A. C.; Grubmüller, H.: Concerted interactions between ribosomal subunits allow for large-scale rotations. 58th Annual Meeting of the Biophysical-Society, San Francisco, CA, 15. Februar 2014 - 19. Februar 2014. Biophysical Journal 106 (Supplement 1), 2 Aufl., S. 491a - 491a (2014)
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