Publications of the Max Planck Institute for Biophysical Chemistry

Publications

Journal Article (8753)

  1. 1.
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    McCormick, J.; Korchak, S.; Mamone, S.; Ertas, Y.; Liu, Z.; Verlinsky, L.; Wagner, S.; Glöggler, S.; Bouchard, L.: More than 12% polarization and 20 minute lifetime of 15N on choline derivative utilizing parahydrogen and Rhodium nanocatalyst in water. Angewandte Chemie International Edition 57 (33), pp. 10692 - 10696 (2018)
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    Bohnenberger, H.; Kaderali, L.; Ströbel, P.; Yepes, D.; Pleßmann, U.; Dharia, N. Y.; Yao, S.; Heydt, C.; Merkelbach‐Bruse, S.; Emmert, A. et al.; Hoffmann, J.; Bodemeyer, J.; Reuter‐Jessen, K.; Lois, A. M.; Dröge, L. H.; Baumeister, P.; Walz, C.; Biggemann, L.; Walter, R.; Häupl, B.; Comoglio, F.; Pan, K. T.; Scheich, S.; Lenz, C.; Küffer, S.; Bremmer, F.; Kitz, J.; Sitte, M.; Beißbarth, T.; Hinterthaner, M.; Sebastian, M.; Lotz, J.; Schildhaus, H. U.; Wolff, H.; Danner, B. C.; Brandts, C.; Büttner, R.; Canis, M.; Stegmaier, K.; Serve, H.; Urlaub, H.; Oellerich, T.: Comparative proteomics reveals a diagnostic signature for pulmonary head-and-neck cancer metastasis. EMBO Molecular Medicine (2018)
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    Vieira, A.; Vergoni, B.; Courtney, M.; Druelle, N.; Gjernes, E.; Hadzic, B.; Avolio, F.; Napolitano, T.; Sanz, S. N.; Mansouri, A. et al.; Collombat, P.: Neurog3 misexpression unravels mouse pancreatic ductal cell plasticity. PLoS One (2018)
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    Fuest, M.; Nocera, G. M.; Modena, M. M.; Riedel, D.; Mejia, Y. X.; Burg, T. P.: Cryofixation during live‐imaging enables millisecond time‐correlated light and electron microscopy. Journal of Microscopy (2018)
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    La Manno, G.; Soldatov, R.; Zeisel, A.; Braun, E.; Hochgerner, H.; Petukhov, V.; Lidschreiber, K.; Kastriti, M. E.; Lönnerberg, P.; Furlan, A. et al.; Fan, J.; Borm, L. E.; Liu, Z.; van Bruggen, D.; Guo, J.; He, X.; Barker, R.; Sundström, E.; Castelo-Branco, G.; Cramer, P.; Adameyko, I.; Linnarsson, S.; Kharchenko, P. V.: RNA velocity of single cells. Nature (2018)
  6. 6.
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    Masch, J. M.; Steffens, H.; Fischer, J.; Engelhardt, J.; Hubrich, J.; Keller-Findeisen, J.; D'Este, E.; Urban, N. T.; Grant, S. G. N.; Sahl, S. J. et al.; Kamin, D.; Hell, S. W.: Robust nanoscopy of a synaptic protein in living mice by organic-fluorophore labeling. Proceedings of the National Academy of Sciences of the United States of America (2018)
  7. 7.
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    Graf, M.; Huter, P.; Maracci, C.; Peterek, M.; Rodnina, M. V.; Wilson, D. N.: Visualization of translation termination intermediates trapped by the Apidaecin 137 peptide during RF3-mediated recycling of RF1. Nature Communications (2018)
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    Lavdovskaia, E.; Kolander, E.; Steube, E.; Mai, M. M.; Urlaub, H.; Richter-Dennerlein, R.: The human Obg protein GTPBP10 is involved in mitoribosomal biogenesis. Nucleic Acids Research (2018)
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    Matsumoto, S.; Caliskan, N.; Rodnina, M. V.; Murata, A.; Nakatani, K.: Small synthetic molecule-stabilized RNA pseudoknot as an activator for -1 ribosomal frameshifting. Nucleic Acids Research (2018)
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    Hilbert, T.; Sumpf, T.; Weiland, E.; Frahm, J.; Thiran, J. P.; Meuli, R.; Kober, T.; Krueger, G.: Accelerated T2 mapping combining parallel MRI and model-based reconstruction: GRAPPATINI. Journal of Magnetic Resonance Imaging 48 (2), pp. 359 - 368 (2018)
  11. 11.
    MPG.PuRe
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    Kopec, W.; Köpfer, D.; Vickery, O. N.; Bondarenko, A. S.; Jansen, T. L. C.; de Groot, B. L.; Zachariae, U.: Direct knock-on of desolvated ions governs strict ion selectivity in K+ channels. Nature Chemistry 10 (8), pp. 813 - 820 (2018)
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    Rossboth, B.; Arnold, A. M.; Ta, H.; Platzer, R.; Kellner, F.; Huppa, J. B.; Brameshuber, M.; Baumgart, F.; Schütz, G. J.: TCRs are randomly distributed on the plasma membrane of resting antigen-experienced T cells. Nature Immunology 19 (8), pp. 821 - 827 (2018)
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    Graen, T.; Klement, R.; Grupi, A.; Haas, E.; Grubmüller, H.: Transient secondary and tertiary structure formation kinetics in the intrinsically disordered state of α-Synuclein from atomistic simulations. ChemPhysChem (2018)
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    Krohn, S.; Joseph, A. A.; Voit, D.; Michaelis, T.; Merboldt, K. D.; Buergers, R.; Frahm, J.: Multi-slice real-time MRI of temporomandibular joint dynamics. Dentomaxillofacial Radiology (2018)
  15. 15.
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    Mogessie, B.; Scheffler, K.; Schuh, M.: Assembly and positioning of the oocyte meiotic spindle. Annual Review of Cell and Developmental Biology (2018)
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    Zimmermann, L.; Stephens, A.; Nam, S. Z.; Rau, D.; Kübler , J.; Lozajic, M.; Gabler, F.; Söding, J.; Lupas, A. N.; Alva, V.: A completely reimplemented MPI Bioinformatics Toolkit with a new HHpred server at its core. Journal of Molecular Biology 430 (15), pp. 2237 - 2243 (2018)
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    Jobelius, H.; Wagner, N.; Schnakenburg, G.; Meyer, A.: Verdazyls as possible building blocks for multifunctional molecular materials: A case study on 1,5-Diphenyl-3-(p-iodophenyl)-verdazyl focusing on magnetism, electron transfer and the applicability of the Sonogashira-Hagihara reaction. Molecules (2018)
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    Zielinska, A.; Schuh, M.: Double trouble at the beginning of life. Science 361 (6398), pp. 128 - 129 (2018)
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    Mühlhausen, S.; Schmitt, H. D.; Pan, K. T.; Plessmann, U.; Urlaub, H.; Hurst, L. D.; Kollmar, M.: Endogenous stochastic decoding of the CUG codon by competing Ser- and Leu-tRNAs in Ascoidea asiatica. Current Biology 28 (13), pp. 2046 - 2057 (2018)
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    Modena, M. M.; Hirschle, P.; Wuttke, S.; Burg, T. P.: Mass measurements reveal preferential sorption of mixed solvent components in porous nanoparticles. Small 14 (27), 1800826 (2018)
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    Aksu, M.; Pleiner, T.; Karaca, S.; Kappert, C.; Dehne, H. J.; Seibel, K.; Urlaub, H.; Bohnsack, M. T.; Görlich, D.: Xpo7 is a broad-spectrum exportin and a nuclear import receptor. Journal of Cell Biology 217 (7), pp. 2329 - 2340 (2018)
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    Dashevskaya, E. I.; Litvin, I.; Nikitin, E. E.; Troe, H. J.: Electronically nonadiabatic mechanism of the vibrational relaxation of NO in Ar: Rate coefficients from ab initio potentials and asymptotic coupling. The Journal of Chemical Physics (2018)
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    Draycheva, A.; Lee, S.; Wintermeyer, W.: Cotranslational protein targeting to the membrane: Nascent-chain transfer in a quaternary complex formed at the translocon. Scientific Reports (2018)
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    Keasar, C.; McGuffin, L. J.; Wallner, B.; Chopra, G.; Adhikari, B.; Bhattacharya, D.; Blake, L.; Bortot, L. O.; Cao, R.; Dhanasekaran, B. K. et al.; Dimas, I.; Faccioli, R. A.; Faraggi, E.; Ganzynkowicz, R.; Ghosh, S.; Giełdoń, A.; Golon, L.; He, Y.; Heo, L.; Hou, J.; Khan, M.; Khatib, F.; Khoury, G. A.; Kieslich, C.; Kim, D. E.; Krupa, P.; Lee, G. R.; Li, H.; Li, J.; Lipska, A.; Liwo, A.; Maghrabi, A. H. A.; Mirdita, M.; Mirzaei, S.; Mozolewska, M. A.; Onel, M.; Ovchinnikov, S.; Shah, A.; Shah, U.; Sidi, T.; Sieradzan, A. K.; Ślusarz, M.; Ślusarz, R.; Smadbeck, J.; Tamamis, P.; Trieber, N.; Wirecki, T.; Yin, Y.; Zhang, Y.; Bacardit, J.; Baranowski, M.; Chapman, N.; Cooper, S.; Defelicibus, A.; Flatten, J.; Koepnick, B.; Popović, Z.; Zaborowski, B.; Baker, D.; Cheng, J.; Czaplewski, C.; Delbem, A. C. B.; Floudas, C.; Kloczkowski, A.; Ołdziej, S.; Levitt, M.; Scheraga, H.; Seok, C.; Söding, J.; Vishveshwara, S.; Xu, D.; Crivelli, S. N.: An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12. Science Reports (2018)
  25. 25.
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    Kiesel, A.; Roth, C.; Ge, W.; Weß, M.; Meier, M.; Söding, J.: The BaMM web server for de-novo motif discovery and regulatory sequence analysis. Nucleic Acids Research 46 (W1), pp. W215 - W220 (2018)
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    Seif Amir Hosseini, A.; Beham, A.; Uhlig, J.; Streit, U.; Uhlig, A.; Ellenrieder, V.; Joseph, A. A.; Voit, D.; Frahm, J.; Uecker, M. et al.; Lotz, J.; Biggemann, L.: Intra- and interobserver variability in the diagnosis of GERD by real-time MRI. European Journal of Radiology 104, pp. 14 - 19 (2018)
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    Tchekalarova, J.; Atanasova, D. Y.; Kortenska, L.; Atanasova, M.; Lazarov, N.: Chronic agomelatine treatment prevents comorbid depression in the post-status epilepticus model of acquired epilepsy through suppression of inflammatory signaling. Neurobiology of Disease 115, pp. 127 - 144 (2018)
  28. 28.
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    Narayanan, R.; Pham, L.; Kerimoglu, C.; Watanabe, T.; Hernandez, R. C.; Sokpor, G.; Ulmke, P. A.; Kiszka, K. A.; Tonchev, A. B.; Rosenbusch, J. et al.; Seong, R. H.; Teichmann, U.; Frahm, J.; Fischer, A.; Bonn, S.; Stoykova, A.; Staiger, J. F.; Tuoc, T.: Chromatin remodeling BAF155 subunit regulates the genesis of basal progenitors in developing cortex. iSience 4, pp. 109 - 126 (2018)
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    Steinegger, M.; Söding, J.: Clustering huge protein sequence sets in linear time. Nature Communications (2018)
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    Frey, S.; Rees, R.; Schünemann, J.; Ng, S. C.; Fünfgeld, K.; Huyton, T.; Görlich, D.: Surface properties determining passage rates of proteins through nuclear pores. Cell 174 (1), pp. 202 - 217 (2018)
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    Spies, J. P.; Bringmann, H.: Automated detection and manipulation of sleep in C. elegans reveals depolarization of a sleep-active neuron during mechanical stimulation-induced sleep deprivation. Scientific Reports (2018)
  32. 32.
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    Cyganek, L.; Tiburcy, M.; Sekeres, K.; Gerstenberg, K.; Bohnenberger, H.; Lenz, C.; Henze, S.; Stauske, M.; Salinas, G.; Zimmermann, W. H. et al.; Hasenfuss, G.; Guan, K.: Deep phenotyping of human induced pluripotent stem cell-derived atrial and ventricular cardiomyocytes. JCI Insight (2018)
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    Neugebohren, J.; Borodin, D.; Hahn, H.; Altschäffel, J.; Kandratsenka, A.; Auerbach, D. J.; Campbell, C. T.; Schwarzer, D.; Harding, D.; Wodtke, A. M. et al.; Kitsopoulos, T. N.: Velocity-resolved kinetics of site-specific carbon monoxide oxidation on platinum surfaces. Nature 558 (7709), pp. 280 - 283 (2018)
  34. 34.
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    von Ardenne, B.; Mechelke, M.; Grubmüller, H.: Structure determination from single molecule X-ray scattering with three photons per image. Nature Communications (2018)
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    Sharma, S.; Lindau, M.: The fusion pore, 60 years after the first cartoon. FEBS Letters (2018)
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    Eilers, Y.; Ta, H.; Gwosch, K.; Balzarotti, F.; Hell, S. W.: MINFLUX monitors rapid molecular jumps with superior spatiotemporal resolution. Proceedings of the National Academy of Sciences of the United States of America 115 (24), pp. 6117 - 6122 (2018)
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    Rydzewski, J.; Jakubowski, R.; Nowak, W.; Grubmüller, H.: Kinetics of huperzine a dissociation from ccetylcholinesterase via multiple unbinding pathways. Journal of Chemical Theory and Computation 14 (6), pp. 2843 - 2851 (2018)
  38. 38.
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    Adio, S.; Sharma, H.; Senyushkina, T.; Karki, P.; Maracci, C.; Wohlgemuth, I.; Holtkamp, W.; Peske, F.; Rodnina, M. V.: Dynamics of ribosomes and release factors during translation termination in E-coli. eLife (2018)
  39. 39.
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    Chen, L.; Schwarzer, D.; Lau, J.A.; Verma, V. B.; Stevens, M. J.; Marsili, F.; Mirin, R. P.; Nam, S. W.; Wodtke, A. M.: Ultra-sensitive mid-infrared emission spectrometer with sub-ns temporal resolution. Optics Express (2018)
  40. 40.
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    Johannsson, S.; Neumann, P.; Wulf, A.; Welp, L. M.; Gerber, H. D.; Krull, M.; Diederichsen, U.; Urlaub, H.; Ficner, R.: Structural insights into the stimulation of S. pombe Dnmt2 catalytic efficiency by the tRNA nucleoside queuosine. Scientific Reports (2018)
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    Pein, F.; Tecuapetla-Gómez, I.; Schütte, O. M.; Steinem, C.; Munk, A.: Fully-automatic multiresolution idealization for filtered ion channel recordings: Flickering event detection. IEEE Transactions on NanoBioscience (2018)
  42. 42.
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    Alexeeva, M.; Guragain, P.; Tesfahun, A. N.; Tomkuviene, M.; Arshad, A.; Gerasimaite, R.; Rugenaite, A.; Urbanaviciute, G.; Bjoras, M.; Laerdahl, J. K. et al.; Klungland, A.; Klimasauskas, S.; Bjelland, S.: Excision of the doubly methylated base N-4,5-dimethylcytosine from DNA by Escherichia coli Nei and Fpg proteins. Philosophical Transactions of the Royal Society B: Biological Sciences 373 (1748), 20170337 (2018)
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    Nguyen, H.; Kerimoglu, C.; Pirouz, M.; Pham, L.; Kiszka, K. A.; Sokpor, G.; Sakib, M. S.; Rosenbusch, J.; Teichmann, U.; Seong, R. H. et al.; Stoykova, A.; Fischer, A.; Staiger, J. F.; Tuoc, T.: Epigenetic regulation by BAF complexes limits neural stem cell proliferation by suppressing Wnt signaling in late embryonic development. Stem Cell Reports 10 (6), pp. 1734 - 1750 (2018)
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    Abayev, M.; Rodrigues, J. P. G. L. M.; Srivastava, G.; Arshava, B.; Jaremko, L.; Jaremko, M.; Naider, F.; Levitt, M.; Anglister, J.: The solution structure of monomeric CCL5 in complex with a doubly sulfated N-terminal segment of CCR5. FEBS Journal (2018)
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    Celik, A. A.; Simper, G. S.; Huyton, T.; Blasczyk, R.; Bade-Döding, C.: HLA-G mediated immune regulation is impaired by a single amino acid exchange in the alpha 2 domain. Human Immunology 79 (6), pp. 453 - 462 (2018)
  46. 46.
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    Habeck, M.; Nguyen, T.: A probabilistic network model for structural transitions in biomolecules. Proteins: Structure, Function, and Bioinformatics 86 (6), pp. 634 - 643 (2018)
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    Jaipuria, G.; Ukmar-Godec, T.; Zweckstetter, M.: Challenges and approaches to understand cholesterol-binding impact on membrane protein function: An NMR view. Cellular and Molecular Life Sciences 75 (12), pp. 2137 - 2151 (2018)
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    Liepe, J.; Ovaa, H.; Mishto, M.: Why do proteases mess up with antigen presentation by re-shuffling antigen sequences? Current Opinion in Immunology 52, pp. 81 - 86 (2018)
  49. 49.
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    Yavuz, H.; Kattan, I.; Hernandez, J. M.; Hofnagel, O.; Witkowska, A.; Raunser, S.; Walla, P. J.; Jahn, R.: Arrest of trans-SNARE zippering uncovers loosely and tightly docked intermediates in membrane fusion. Journal of Biological Chemistry 293, pp. 8645 - 8655 (2018)
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    Bari, S.; Egorov, D.; Jansen, T. L.C.; Boll, R.; Hoekstra, R.; Techert, S.; Zamudio-Bayer, V.; Bülow, C.; Lindblad, R.; Leistner, G. et al.; Lawicki, A.; Hirsch, K.; Miedema, P. S.; von Issendorf, B.; Lau, T.; Schlathölter, T.: Soft X-ray spectroscopy as a probe for gas-phase protein structure: Electron impact ionization from within. Chemistry - A European Journal 24 (30), pp. 7631 - 7636 (2018)
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    Kaufmann, S.; Shuai, Q.; Auerbach, D. J.; Schwarzer, D.; Wodtke, A. M.; AM: Associative desorption of hydrogen isotopologues from copper surfaces: Characterization of two reaction mechanisms. Journal of Chemical Physics 148 (19), 194703 (2018)
  52. 52.
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    Engel, C.; Neyer, S.; Cramer, P.: Distinct mechanisms of transcription initiation by RNA polymerases I and II. Annual Review of Biophysics 47, pp. 425 - 446 (2018)
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    Soliman, K.; Göttfert, F.; Rosewich, H.; Thoms, S.; Gartner, J.: Super-resolution imaging reveals the sub-diffraction phenotype of Zellweger Syndrome ghosts and wild-type peroxisomes. Scientific Reports (2018)
  54. 54.
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    Auer, T.; Dewiputri, W. I.; Frahm, J.; Schweizer, R.: Higher-order brain areas associated with real-time functional MRI neurofeedback training of the somato-motor cortex. Neuroscsience 378, pp. 22 - 33 (2018)
  55. 55.
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    Doeppner, T. R.; Herz, J.; Bähr, M.; Tonchev, A. B.; Stoykova, A.: Zbtb20 regulates developmental neurogenesis in the olfactory bulb and gliogenesis after adult brain injury. Molecular Neurobiology (2018)
  56. 56.
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    Liu, X.; Farnung, L.; Wigge, C.; Cramer, P.: Cryo-EM structure of a mammalian RNA polymerase II elongation complex inhibited by α-amanitin. Journal of Biological Chemistry 293 (19), pp. 7189 - 7194 (2018)
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    Dorenkamp, Y.; Volkmann, C.; Roddatis, V.; Schneider, S.; Wodtke, A. M.; Bünermann, O.: Inelastic H atom scattering from ultrathin aluminum oxide films grown by atomic layer deposition on Pt(111). The Journal of Physical Chemistry C 122 (18), pp. 10096 - 10102 (2018)
  58. 58.
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    Steinsiek, C.; Shirhatti, P. R.; Geweke, J.; Bartels, C.; Wodtke, A. M.: Work function dependence of vibrational relaxation probabilities: NO(v=2) scattering from ultrathin metallic films of Ag/Au(111). The Journal of Physical Chemistry C 122 (18), pp. 10027 - 10033 (2018)
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    Ananth, A.; Genua, M.; Aissaoui, N.; Diaz, L.; Eisele, N. B.; Frey, S.; Dekker, C.; Richter, R. P.; Görlich, D.: Reversible immobilization of proteins in sensors and solid-state nanopores. Small 14 (18), 1703357 (2018)
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    Heinz, L. P.; Kopec, W.; de Groot, B. L.; Fink, R. H. A.: In silico assessment of the conduction mechanism of the Ryanodine Receptor 1 reveals previously unknown exit pathways. Scientific Reports (2018)
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    Bauke, S.; Golibrzuch, K.; Wackerbarth, H.; Fendt, P.; Zigan, L.; Seefeldt, S.; Thiele, O.; Berg, T.: Optical sensor system for time-resolved quantification of methane concentrations: Validation measurements in a rapid compression machine. Journal of Quantitative Spectroscopy and Radiative Transfer 210, pp. 101 - 110 (2018)
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    Fauerbach, J.; Jovin, T. M.: Pre‑aggregation kinetics and intermediates of α‑synuclein monitored by the ESIPT probe 7MFE. European Biophysics Journal 47 (4), pp. 345 - 362 (2018)
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    Grasmair, M.; Li, H.; Munk, A.: Variational multiscale nonparametric regression: Smooth functions. Annales de l'Institut Henri Poincaré, Probabilités et Statistiques 54 (2), pp. 1058 - 1097 (2018)
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    Hallwass, F.; Teles, R. R.; Hellemann , E.; Griesinger, C.; Gil, R. R.; Navarro-Vázquez, A.: Measurement of residual chemical shift anisotropies in compressed PMMA gels. Automatic compensation of gel isotropic shift contribution. Magnetic Resonance in Chemistry 56 (5), pp. 321 - 328 (2018)
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    Heine, J.; Wurm, C. A.; Keller-Findeisen, J.; Schönle, A.; Harke, B.; Reuss, M.; Winter, F. R.; Donnert, G.: Three dimensional live-cell STED microscopy at increased depth using a water immersion objective. Review of Scientific Instruments 47 (4), 053701 (2018)
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    Jäckle, H.; Rotte, C.; Gruss, P.: Manfred Eigen: The realization of his vision of Biophysical Chemistry. European Biophysics Journal 47 (4), pp. 319 - 323 (2018)
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    Korchak, S.; Yang, S.; Mamone, S.; Glöggler, S.: Pulsed magnetic resonance to signal‐enhance metabolites within seconds by utilizing para‐hydrogen. ChemistryOpen 7 (5), pp. 344 - 348 (2018)
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    Mager, T.; de la Morena, D. L.; Senn, V.; Schlotte, J.; D´Errico, A.; Feldbauer, K.; Wrobel, C.; Jung, S.; Bodensiek, K.; Rankovic, V. et al.; Browne, L.; Huet, A.; Jüttner, J.; Wood, P. G.; Letzkus, J. J.; Moser, T.; Bamberg, E.: High frequency neural spiking and auditory signaling by ultrafast red-shifted optogenetics. Nature Communications (2018)
  69. 69.
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    Marsh, D.: Molecular order and T1-relaxation, cross-relaxation in nitroxide spin labels. Journal of Magnetic Resonance 290, pp. 38 - 45 (2018)
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    Oranges, M.; Guzzi, R.; Marsh, D.; Bartucci, R.: Ether-linked lipids: Spin-label EPR and spin echoes. Chemistry and Physics of Lipids 212, pp. 130 - 137 (2018)
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    Pörschke, D.: Kinetics of the B-A transition of DNA: Analysis of potential contributions to a reaction barrier. European Biophysics Journal 47 (4), pp. 325 - 332 (2018)
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    Weill, U.; Arakel, E. C.; Goldmann, O.; Golan, M.; Chuartzman, S.; Munro, S.; Schwappach, B.; Schuldiner, M.: Toolbox: Creating a systematic database of secretory pathway proteins uncovers new cargo for COPI. Traffic 19 (5), pp. 370 - 379 (2018)
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    Zaman, U.; Urlaub, H.; Abbasi, A.: Protein profiling of non-model plant Cuminum cyminum by gel-based proteomic approach. Phytochemical Analysis 29 (3), pp. 242 - 249 (2018)
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