Publications
Journal Article (97)
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1.Journal ArticleMechanisms for active regulation of biomolecular condensates. Trends in Cell Biology 30 (1), pp. 4 - 14 (2020)
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2.Journal ArticleReconstructing complex lineage trees from scRNA-seq data using MERLoT. Nucleic Acids Research 47 (17), pp. 8961 - 8974 (2019)
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3.Journal ArticlePROSSTT: Probabilistic simulation of single-cell RNA-seq data for complex differentiation processes. Bioinformatics 35 (18), pp. 3517 - 3519 (2019)
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4.Journal ArticleHH-suite3 for fast remote homology detection and deep protein annotation. BMC Bioinformatics 20 (1) (2019)
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5.Journal ArticleMMseqs2 desktop and local web server app for fast, interactive sequence searches. Bioinformatics 35 (16), pp. 2856 - 2858 (2019)
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6.Journal ArticleLysine/RNA-interactions drive and regulate biomolecular condensation. Nature Communications 10 (1) (2019)
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7.Journal ArticleProtein-level assembly increases protein sequence recovery from metagenomic samples manyfold. Nature Methods 16, pp. 603 - 606 (2019)
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8.Journal ArticleTranscriptome maps of general eukaryotic RNA degradation factors. eLife 8 (2019)
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9.Journal ArticleBayesian multiple logistic regression for case-control GWAS. PLoS Genetics 14 (12), e1007856. (2018)
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10.Journal ArticleSynthetic protein alignments by CCMgen quantify noise in residue-residue contact prediction. PLoS Computational Biology 14 (11) (2018)
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11.Journal ArticleA completely reimplemented MPI Bioinformatics Toolkit with a new HHpred server at its core. Journal of Molecular Biology 430 (15), pp. 2237 - 2243 (2018)
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12.Journal ArticleAn analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12. Scientific Reports 8 (2018)
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13.Journal ArticleThe BaMM web server for de-novo motif discovery and regulatory sequence analysis. Nucleic Acids Research 46 (W1), pp. W215 - W220 (2018)
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14.Journal ArticleClustering huge protein sequence sets in linear time. Nature Communications 9 (2018)
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15.Journal ArticleMMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets. Nature Biotechnology 35 (11), pp. 1026 - 1028 (2017)
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16.Journal ArticleWIsH: Who is the host? Predicting prokaryotic hosts from metagenomic phage contigs. Bioinformatics 33 (19), pp. 3113 - 3114 (2017)
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17.Journal ArticleRNA-dependent chromatin association of transcription elongation factors and Pol II CTD kinases. eLife 6 (2017)
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18.Journal ArticleGenome-wide analysis of RNA polymerase II termination at protein-coding genes. Molecular Cell 66 (1), pp. 38 - 49 (2017)
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19.Journal ArticleBig-data approaches to protein structure prediction. Science 355 (6322), pp. 248 - 249 (2017)
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20.Journal ArticleUniclust databases of clustered and deeply annotated protein sequences and alignments. Nucleic Acids Research 45 (D1), pp. D170 - D176 (2017)